DreEX6033298 @ danRer10
Exon Skipping
Gene
ENSDARG00000016818 | abcg2d
Description
ATP-binding cassette, sub-family G (WHITE), member 2d [Source:ZFIN;Acc:ZDB-GENE-050517-38]
Coordinates
chr1:49940886-49942703:-
Coord C1 exon
chr1:49942589-49942703
Coord A exon
chr1:49941182-49941334
Coord C2 exon
chr1:49940886-49941043
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATGTATGTGTGTGTGTTCAGGAT
3' ss Score
9.21
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GTTTTTGGACGTCCTTGCTGGCAGGAAGGATCCCGCTGGTCTTTCTGGTGAAGTTCTCGTCAACGGAGCCCTACAGCCGGCCAATTTCAAATGTCTTTCTGGCTACGTTGTCCAG
Seq A exon
GATGACATTGTAATGGGCACTCTAACGGTGAGAGAGAACCTGAGTTTCTCAGCTGCTCTGCGTTTGTCTTCTCATGTCAGTCCCAGAGAAAAGGAGGCAAGAGTCAACCATCTCATCTCCGAGCTGGGCCTCAACAAAGTCGCAGATTCCAAG
Seq C2 exon
GTGGGCACTCAAATAATCAGGGGGATCTCGGGTGGAGAGAGGAAGAGGACCAGCATCGGGATGGAGCTGATCATTGACCCCTCTGTGCTCTTTTTGGATGAACCCACCACCGGTTTGGACGCTAGTACAGCTCATTCTGTGCTGCTGCTGCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016818-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.0=100)
A:
PF0000522=ABC_tran=FE(34.2=100),PF030589=Sar8_2=PU(56.7=74.5)
C2:
PF0000522=ABC_tran=PD(24.7=67.9),PF030589=Sar8_2=PD(40.3=50.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTGGACGTCCTTGCTGG
R:
GTACTAGCGTCCAAACCGGTG
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]