RnoEX6013723 @ rn6
Exon Skipping
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88862176-88864611:+
Coord C1 exon
chr4:88862176-88862290
Coord A exon
chr4:88862846-88862998
Coord C2 exon
chr4:88864454-88864611
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATGCCACCTTGCCTTAAGGAT
3' ss Score
3.96
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTGCTAGATGTCCTAGCAGCAAGGAAAGACCCACGGGGATTATCTGGAGATGTTTTGATAAACGGGGCACCTCAACCTGCCAATTTCAAATGCAGTTCAGGTTATGTGGTTCAA
Seq A exon
GATGACGTTGTGATGGGCACCCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGCCTTCCAAAAGCTATGAAGACGCATGAAAAAAATGAACGGATTAACACGATCATTAAAGAGTTAGGCCTGGACAAAGTAGCAGATTCCAAG
Seq C2 exon
GTTGGAACTCAGTTTACCCGTGGTATCTCTGGAGGAGAAAGAAAAAGGACAAGCATAGGAATGGAGCTCATCACTGACCCTTCCATCCTCTTCCTGGATGAGCCCACAACTGGTTTGGACTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041-'13-9,'13-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.020 C2=0.057
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(33.1=100)
C2:
PF0000522=ABC_tran=PD(23.8=67.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGCAGCAAGGAAAGACCC
R:
TTCAGGAGCAAAAGGACAGCA
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]