GgaEX1005640 @ galGal4
Exon Skipping
Gene
ENSGALG00000005792 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr6:17105462-17108643:+
Coord C1 exon
chr6:17105462-17105576
Coord A exon
chr6:17107645-17107797
Coord C2 exon
chr6:17108486-17108643
Length
153 bp
Sequences
Splice sites
3' ss Seq
TATCTTGGTATTGCTTTCAGGAT
3' ss Score
8.19
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTGCTAGATGTGCTGGCTGCCAGAAAGGACCCAGCAGGCCTGTCTGGAGAAGTGCTCATAGATGGCATCCCACAACCTCCAAACTTCAAGTGCATCTCAGGATATGTTGTGCAG
Seq A exon
GATGATGTTGTCATGGGCACAATGACAGTGAGGGAGAACCTGCACTTCTCTGCTGCCCTCCGGCTCCCCAGCTCCATCAGCTTTCAAGAGAAGGAAGAACGAGTCACACAGATAATTGGCGAGCTGGGATTAAGCAAAGTGGCTGATGCTAAG
Seq C2 exon
GTAGGAACTGAATTGATCCGTGGAGTGTCTGGAGGGGAACGGAAAAGAACCAACATCGGGATGGAGCTCATCACAGAGCCACCAGTGCTTTTTCTGGATGAGCCAACAACAGGCCTTGATGCCAGCACGGCCAATGCTGTCCTCATCCTCTTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(33.1=100)
C2:
PF0000522=ABC_tran=PD(23.8=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGGACCCAGCAGGC
R:
GAGGATGAGGACAGCATTGGC
Band lengths:
244-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]