BtaEX0001886 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37994057-37997923:+
Coord C1 exon
chr6:37994057-37994171
Coord A exon
chr6:37994984-37995136
Coord C2 exon
chr6:37997766-37997923
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAATGCCATTTTTCTTTAAGGAT
3' ss Score
7.27
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTGTTAGATATCTTAGCTGCAAGGAAGGATCCACATGGATTATCTGGAGATGTTTTGATCAATGGAGCACCTCGACCTGCCAATTTTAAATGTAACTCAGGTTATGTGGTACAA
Seq A exon
GATGATGTTGTGATGGGAACTCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCCCTTCGGCTTCCAACAACTATGACAAGTTACGAAAAAAATGAACGGATTAACAAGGTTATTCAAGAGTTAGGTCTGGATAAAGTGGCAGATTCCAAG
Seq C2 exon
GTTGGAACTCAGTTTATCCGTGGTGTGTCTGGAGGAGAAAGAAAAAGGACTAGTATTGCAATGGAGCTTATTACTGATCCATCCATCTTGTTCCTGGATGAGCCCACAACTGGCTTAGATTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(33.1=100)
C2:
PF0000522=ABC_tran=PD(23.8=67.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGCTGCAAGGAAGGATCC
R:
TCAGGAGCAAAAGGACAGCAT
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development