RnoEX0005345 @ rn6
Exon Skipping
Gene
ENSRNOG00000030216 | Abcg3l1
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 1 [Source:RGD Symbol;Acc:1303294]
Coordinates
chr14:6529534-6531201:-
Coord C1 exon
chr14:6531142-6531201
Coord A exon
chr14:6530173-6530287
Coord C2 exon
chr14:6529534-6529686
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTATAATTAACCCTTTGTAGGTT
3' ss Score
6.22
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGGGATCATGGGACCTGGCCTCAATGCCATTATGGGACCTCAGGATGGGAGCAGATCTCT
Seq A exon
GTTATTAGATGTCTTAGCTGCAAGGAGAGATCCGTGTGGATTATCAGGAGATATTTTGATAAACGGTAAACCTCGACCTGCTAATTTCAAATGTACATCTGGTTATATACCACAA
Seq C2 exon
AATGATGTGGTGTTGGGCACAGTGACCGTGAGAGACAATTTAGAGTTCTCAGCAGCTCTCCGACTTCCAATGACTGTAACAAGAGATGAAAAAAGGAGGAGGATCAATGAGGTGCTTGAACTTCTTCATCTGGAAAAAGAACAAAATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030216_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.110 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(11.1=71.4)
A:
PF0000522=ABC_tran=FE(28.1=100)
C2:
PF0000522=ABC_tran=FE(37.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATGGGACCTGGCCTCAA
R:
CTTGACATTTTGTTCTTTTTCCAGAT
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]