HsaEX6085333 @ hg38
Exon Skipping
Gene
ENSG00000118777 | ABCG2
Description
ATP binding cassette subfamily G member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr4:88131061-88132635:-
Coord C1 exon
chr4:88132576-88132635
Coord A exon
chr4:88131803-88131917
Coord C2 exon
chr4:88131061-88131213
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACATATATGTCCTCTTATAGGTT
3' ss Score
10.14
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGGGATCATGAAACCTGGTCTCAACGCCATCCTGGGACCCACAGGTGGAGGCAAATCTTC
Seq A exon
GTTATTAGATGTCTTAGCTGCAAGGAAAGATCCAAGTGGATTATCTGGAGATGTTCTGATAAATGGAGCACCGCGACCTGCCAATTTCAAATGTAATTCAGGTTACGTGGTACAA
Seq C2 exon
GATGATGTTGTGATGGGCACTCTGACGGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGGCTTGCAACAACTATGACGAATCATGAAAAAAACGAACGGATTAACAGGGTCATTCAAGAGTTAGGTCTGGATAAAGTGGCAGACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777-'10-14,'10-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.059
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
PF0000522=ABC_tran=FE(25.2=100)
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCATGAAACCTGGTCTCA
R:
TGGAGTCTGCCACTTTATCCAGA
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains