GgaEX1005639 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr6:18628243-18631869:+
Coord C1 exon
chr6:18628243-18628302
Coord A exon
chr6:18629534-18629648
Coord C2 exon
chr6:18631717-18631869
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGCCTGGTGTTTGTCTGAAGTCT
3' ss Score
4.21
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGGCATTATGAAGCCAGGCTTGAATGCTATCCTGGGGCCAACAGGGAGCGGCAAATCTTC
Seq A exon
TCTGCTAGATGTGCTGGCTGCCAGAAAGGACCCAGCAGGCCTGTCTGGAGAAGTGCTCATAGATGGCATCCCACAACCTCCAAACTTCAAGTGCATCTCAGGATATGTTGTGCAG
Seq C2 exon
GATGATGTTGTCATGGGCACAATGACAGTGAGGGAGAACCTGCACTTCTCTGCTGCCCTCCGGCTCCCCAGCTCCATCAGCTTTCAAGAGAAGGAAGAACGAGTCACACAGATAATTGGCGAGCTGGGATTAAGCAAAGTGGCTGATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
PF0000522=ABC_tran=FE(25.2=100)
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTATGAAGCCAGGCT
R:
CTTAGCATCAGCCACTTTGCT
Band lengths:
213-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]