DreEX6033297 @ danRer10
Exon Skipping
Gene
ENSDARG00000016818 | abcg2d
Description
ATP-binding cassette, sub-family G (WHITE), member 2d [Source:ZFIN;Acc:ZDB-GENE-050517-38]
Coordinates
chr1:49941182-49942887:-
Coord C1 exon
chr1:49942828-49942887
Coord A exon
chr1:49942589-49942703
Coord C2 exon
chr1:49941182-49941334
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCTCTCTCTCAGGTT
3' ss Score
12.55
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
TGGGATCATGAGACCTGGTTTAAATGCTATTTTGGGTCCTACGGGAAGTGGCAAATCTTC
Seq A exon
GTTTTTGGACGTCCTTGCTGGCAGGAAGGATCCCGCTGGTCTTTCTGGTGAAGTTCTCGTCAACGGAGCCCTACAGCCGGCCAATTTCAAATGTCTTTCTGGCTACGTTGTCCAG
Seq C2 exon
GATGACATTGTAATGGGCACTCTAACGGTGAGAGAGAACCTGAGTTTCTCAGCTGCTCTGCGTTTGTCTTCTCATGTCAGTCCCAGAGAAAAGGAGGCAAGAGTCAACCATCTCATCTCCGAGCTGGGCCTCAACAAAGTCGCAGATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016818-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(13.0=90.5)
A:
PF0000522=ABC_tran=FE(26.0=100)
C2:
PF0000522=ABC_tran=FE(34.2=100),PF030589=Sar8_2=PU(56.7=74.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCATGAGACCTGGTTT
R:
GGAATCTGCGACTTTGTTGAGG
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]