RnoEX6013724 @ rn6
Exon Skipping
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88861405-88862998:+
Coord C1 exon
chr4:88861405-88861464
Coord A exon
chr4:88862176-88862290
Coord C2 exon
chr4:88862846-88862998
Length
115 bp
Sequences
Splice sites
3' ss Seq
AACATGTGTGTTCTTTACAGGTT
3' ss Score
10.61
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TGGGATCATGAAACCTGGTCTTAATGCTATTCTGGGACCCACAGGCGGAGGCAAGTCTTC
Seq A exon
GTTGCTAGATGTCCTAGCAGCAAGGAAAGACCCACGGGGATTATCTGGAGATGTTTTGATAAACGGGGCACCTCAACCTGCCAATTTCAAATGCAGTTCAGGTTATGTGGTTCAA
Seq C2 exon
GATGACGTTGTGATGGGCACCCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGCCTTCCAAAAGCTATGAAGACGCATGAAAAAAATGAACGGATTAACACGATCATTAAAGAGTTAGGCCTGGACAAAGTAGCAGATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041-'12-8,'12-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.128 C2=0.020
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(13.2=100)
A:
PF0000522=ABC_tran=FE(25.2=100)
C2:
PF0000522=ABC_tran=FE(33.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCATGAAACCTGGTCT
R:
GGAATCTGCTACTTTGTCCAGGC
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]