RnoEX0006238 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189254025-189259988:+
Coord C1 exon
chr1:189254025-189254104
Coord A exon
chr1:189259055-189259178
Coord C2 exon
chr1:189259908-189259988
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCCTGCTTGCGAAAGGTA
3' ss Score
5.01
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACTCTCTGCAGGTTCCCAATAACCACCATTTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGTACAAGAGGATCTGACAAG
Seq A exon
GTACAAGTTCCAGTGCCTCAGACACTGTTTGGCCGGTGGAGAAGCCCTCAACTCTGACGTGAGGGACAAGTGGAAGAACCAGACAGGCCTGGAGATCCATGAAGGCTACGGACAATCAGAAACA
Seq C2 exon
GTCCTCATCTGTGGCAATTTTAGAGGCTCAACGATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211-'14-17,'14-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCTGCAGGTTCCCAATA
R:
TCGTAAGGTGGGCTTGCTTTC
Band lengths:
154-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]