BtaEX0002263 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037449 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr25:18224585-18227091:+
Coord C1 exon
chr25:18224585-18224664
Coord A exon
chr25:18226025-18226148
Coord C2 exon
chr25:18227011-18227091
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGGTTGAGAAAGGTA
3' ss Score
-0.48
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ACTCTGTCCAGGTTCCCGATCACCACCCTCTGTTGTGTCCCCACCATGTTCCGTCTGCTTGTGCAGGAGGACCTAACCAG
Seq A exon
GTACCAGTTTCAGAGCTTGAGACACTGTGTGACCGGAGGGGAGGCCCTGACTCCTGATGTGAGGGAAAAGTGGAAGAGCCAGACGGGCCTGGAGCTGCACGAAGGCTATGGCCAGTCTGAAACC
Seq C2 exon
GTTGTAATCTGTGCCAATCCAAAAGGGATGAAAATCAAGTCAGGATCCATGGGGAAAGCGTCCCCACCATATGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037449_MULTIEX1-8/10=6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
PF0050123=AMP-binding=FE(10.4=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
ENSBTAT00000054846fB359
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTCCAGGTTCCCGATCA
R:
CACATCATATGGTGGGGACGC
Band lengths:
157-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development