RnoEX0007580 @ rn6
Exon Skipping
Gene
ENSRNOG00000018421 | Aen
Description
apoptosis enhancing nuclease [Source:RGD Symbol;Acc:1305051]
Coordinates
chr1:140584380-140591276:+
Coord C1 exon
chr1:140584380-140584672
Coord A exon
chr1:140587564-140588151
Coord C2 exon
chr1:140591076-140591276
Length
588 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGCTCTCTCTTCAGCAC
3' ss Score
10.5
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGTCAAGGCTTCCACGTGAAAGCCGCAAAGTGCGGCCCGGTCTTCAGGTGAGCTAGGGGACCGCCACAGGGAGCCCCGGGCTGCGGGTTCCTGTCGCCAGCCTCACGTGGCTCTCGGGACCGGGTGGTGTGCAGCCAGGCCGGAACGCGGCCTCACGCGGTCTTTCCCAACTTGGAGCCGGTGGGCATCAGGGGACCGCGTGGACATTGAGCGTCCACTGCACGCCTCAGCTGTGAGGATTGCGGCCTGCCCTCATACTTAAAAAACAAACAAACAAACAAAAAACTGGTCAG
Seq A exon
CACACTGCCTCGTGGGCAGACAGCCTCCAGAGCTTTCTTACCGCTGCCTGTGAGCTGGCTGGCATGGTGCCCAGGGAAGTCCCTGAGTCTTCCCTCACTAGCCTGAAGACCAAGGATGTGGCTCGGAGGAGACACAAAAGGAGAAGCCGGCAGCACCAGCGGTTCATGGCCCGCAAGGCCTTGCTTCAGGAGCAGGAGTCGTTGAGCATGGTACCAGGGCCAGGACTCTGCCCTCTGCCCTCCCCAACACAGACGCCAGCAGGCACAGAGGCTTCAGGCAACAGGAAACAACGTACCAAGGCCAGGTCTGGCAGCAAAGGCCTGTGTAGCAAAAGGCCTGTCCCCAGAGAAGCCCCAAGCTCTGGGCCCAGCAAGTATGTGGCCATTGACTGTGAGATGGTGGGTACCGGCCCCCAAGGGCGAGTGAGTGAGCTAGCCCGCTGCTCCGTGGTGAGTTACAGTGGTGATGTTCTCTATGACAAGTACATCCGGCCTGAAATGCCCATTGTGGACTATCGAACCCGCTGGAGCGGCATTACCCGTCAGCACATGCACAAGGCTATCCCCTTTCAGGTGGCCCAGAAGGAG
Seq C2 exon
ATCCTTAAGCTGCTGAAGGGCAAGGTGGTGGTGGGGCATGCACTGCACAATGACTTCCAGGCCCTGAAGTACGTCCACCCTGGGAGCCAGATCCGGGATACGACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTCCCTCACCCGAGCTCGGGTCTCTCTTAAGGACCTGGCCCTGAACCTGCTGCACAAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018421_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.583 C2=0.015
Domain overlap (PFAM):
C1:
NA
A:
PF0092919=RNase_T=PU(44.2=39.4)
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAAGGCTTCCACGTGAAA
R:
GCCTGGAAGTCATTGTGCAGT
Band lengths:
355-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]