RnoEX0008009 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173598286-173603912:-
Coord C1 exon
chr5:173603706-173603912
Coord A exon
chr5:173601955-173602155
Coord C2 exon
chr5:173598286-173598413
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGCTTCTTCCTGTAGAGA
3' ss Score
8.58
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACCAGTGCCCGGAGACCTGCCAGTTTAACTCCGTATGCCTGTCCCGCCGTGGCCGTCCCCACTGTTCCTGCGATCGTGTCACCTGTGATGGGTCTTACAGGCCTGTGTGTGCCCAAGATGGGCACACATACAACAATGACTGTTGGCGCCAACAGGCTGAGTGTCGACAACAGCGGGCCATTCCTCCCAAGCACCAGGGCCCGTGTG
Seq A exon
AGACCTGTGGAGAAAAAGTTTGTACTTTTGGGGCTGTGTGCTCAGCTGGACAGTGTGTATGTCCCCGTTGTGAGCACCCTCCACCTGGCCCTGTGTGTGGCAGTGATGGTGTCACCTACCTCAGTGCCTGTGAGCTACGCGAAGCTGCCTGTCAGCAGCAGGTACAAATTGAGGAGGCCCATGCAGGGCCATGTGAGCCGG
Seq C2 exon
CTACCAAGGCATTCCAGGGCGTGCTGGAGCTTGAGGGGGTCGAGGGACAGGAACTGTTCTACACACCTGAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAGACCGCAAGGAGCATTGAAAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205_MULTIEX2-4/13=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PD(95.8=97.1)
A:
PF0764810=Kazal_2=WD(100=66.2)
C2:
PF0139015=SEA=FE(38.9=100)
Main Skipping Isoform:
ENSRNOT00000045678fB818
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGACCTGCCAGTTTAAC
R:
CGGTCTCCCCAAACAACTCTG
Band lengths:
307-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]