BtaEX0002872 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52681229-52685147:-
Coord C1 exon
chr16:52684953-52685147
Coord A exon
chr16:52684661-52684861
Coord C2 exon
chr16:52681229-52681356
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTGGCTCTGCCTTCTCTAGAGA
3' ss Score
8.6
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ACCGCTGTGGGCAGTGCCGCTTTGGAGCCCTGTGTGAAGCTGAGACCGGGCGCTGTGTGTGCCCCTCCGAATGTGTGGCCTCAGCCCAGCCTGTGTGTGGCTCTGATGGGCGCACGTATGCCAGTGAATGTGAACTACACGTCCACGCCTGCACACACCAGATCAGTCTGCACGTGGCCTCGGCTGGTCCTTGCC
Seq A exon
AGACCTGTGGAGACACAGTGTGTGCCTTTGGGGCTGTGTGCTCAGCGGGGCAGTGCGTGTGTCCCCGGTGTGAGCGCCCTCCACCCGGCCCCGTGTGTGGCAGCGATGGCGTGACCTACGGCAGTTCATGCGAGCTCCGTGAGGCTGCCTGTCAGCAGCAAACACAGATCGAGGAGGCCTGGGCGGGGCCGTGTGAGCAAG
Seq C2 exon
CCACCAAGGTGTTCCAGGGTGTGCTGGAGCTTGAGGGGGTCGAGGGGCAAGAACTGTTCTACACGCCGGAGATGGCAGACCCCAAGTCTGAGCTGTTTGGGGAGACTGCCAGGAGCATTGAGAGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191_MULTIEX2-4/13=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=81.8)
A:
PF0764810=Kazal_2=WD(100=66.2)
C2:
PF0139015=SEA=FE(37.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAGCCCTGTGTGAAG
R:
CTCCTGGCAGTCTCCCCAAA
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development