BtaEX0002869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52681229-52682362:-
Coord C1 exon
chr16:52682030-52682362
Coord A exon
chr16:52681813-52681950
Coord C2 exon
chr16:52681229-52681356
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCAGACTGTACCTCCCCAGGAC
3' ss Score
6.47
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAGGCATCACTTCTGGTCCCCGTGTGACATCCGCATCTGTGGCTCCCTCAGCACTTGACCTGAACAAGGCACCATTGCCGCCCCCCAGCGCCTTGCCCCTGGCTCCCAGCAGTACCCGCCACAGCCAGCCCACTTCTCGAGCCTCATCACAACCTTGGACCATGGCCAGCATCCCCAGGACCACTGCAAGGCCAGTGCTGACCATGCCTCCCGTGGCCCCCTCCCCGGCAGCCAGCCTCGTCACCTCTGCCTTCGGCGAATCTGGCAGCGCTGATGGGAGTGGTGACGAGGAGCTGAGTGGTGACTTGGAGGCCAGTGGGGCTGGCTCAGGAG
Seq A exon
GACTTGAGTCCCCGGAAAGAGACAGTGCTGGGACCCCTGGGCTACCCATGGAAAGGGCTTCCTGCTACAACTCGCCTATGGGCTGCTGCTCAGATGGCAAGACACCCTCCCTGGACGCAGAGGGCTCTAACTGTCCTG
Seq C2 exon
CCACCAAGGTGTTCCAGGGTGTGCTGGAGCTTGAGGGGGTCGAGGGGCAAGAACTGTTCTACACGCCGGAGATGGCAGACCCCAAGTCTGAGCTGTTTGGGGAGACTGCCAGGAGCATTGAGAGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191_MULTIEX2-13/13=12-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.766 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
PF0139015=SEA=PU(0.9=2.1)
C2:
PF0139015=SEA=FE(37.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGAGCCTCATCACAACCT
R:
GAACAGTTCTTGCCCCTCGAC
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development