GgaEX6023922 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2722532-2724025:-
Coord C1 exon
chr21:2723642-2724025
Coord A exon
chr21:2723397-2723531
Coord C2 exon
chr21:2722532-2722659
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACCTTAATACTTCCTTGCAGGGG
3' ss Score
9.57
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGTCTATAACTCACACGAGCCATACGATGCCACCCACCCCTCTGCCCACCTTGCCCTTGGACAAGCTCATCGTACCCCCACCACTGCAGCTGACCACCCAGGCTCCAGAGCCCACTGAGCTGGCCACCACCTCCCTGCTGATGGAAGCCAGCCCCACTACAAGAAGTCACCCTACAACAAGGCGTGTCACAACGACCCGACCTGTCACCACACCATGGATGACCCATGGAGTGCTGAAGACCACCGTCCGCCCACTCTCCACCTCTCCAGTGGTCCTGGCCACCACTCAGCCTCCCTACGCTGAATCGGGCAGTGCAGAAGGCAGTGGGGACCAGGAGATGAGCATCAGTGGGGACCAGGAATCCAGTGGGGCAGGCTCTGCTG
Seq A exon
GGGAAGAGGAGGTGGAGGAAAGCCAGGTAACCCCAACTCCAGCCATTGAGAGGGCAACGTGCTACAACACCCCACTCGGGTGCTGCTCTGATGGCAAGACTGCAGCTGCTGATGCAGAAGGGAGCAACTGTCCGG
Seq C2 exon
CTACCAAAGTCTTCCAAGGAGTCCTCATCTTGGAGGAGGTGGAAGGCCAGGAGCTGTTCTACACACCTGAGATGGCTGACCCCAAGTCAGAGCTCTTCGGGGAGACAGCCAGGAGCATCGAGAGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'40-39,'40-37,42-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.603 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
PF0139015=SEA=PU(0.9=2.2)
C2:
PF0139015=SEA=FE(37.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGTGCTGAAGACCACC
R:
GACTTGGGGTCAGCCATCTCA
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]