RnoEX0008006 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173598286-173603912:-
Coord C1 exon
chr5:173603706-173603912
Coord A exon
chr5:173598835-173598972
Coord C2 exon
chr5:173598286-173598413
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTAGACTACATTTCCCCAGGAC
3' ss Score
5.43
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACCAGTGCCCGGAGACCTGCCAGTTTAACTCCGTATGCCTGTCCCGCCGTGGCCGTCCCCACTGTTCCTGCGATCGTGTCACCTGTGATGGGTCTTACAGGCCTGTGTGTGCCCAAGATGGGCACACATACAACAATGACTGTTGGCGCCAACAGGCTGAGTGTCGACAACAGCGGGCCATTCCTCCCAAGCACCAGGGCCCGTGTG
Seq A exon
GACTTGAGCCCCCGGTGGGCAGCATTGTGGTGACCCATGGGCCACCCATCGAGAGGGCTTCCTGCTACAACTCACCTTTGGGCTGCTGCTCAGATGGCAAGACACCCTCACTGGACTCCGAAGGCTCCAACTGTCCTG
Seq C2 exon
CTACCAAGGCATTCCAGGGCGTGCTGGAGCTTGAGGGGGTCGAGGGACAGGAACTGTTCTACACACCTGAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAGACCGCAAGGAGCATTGAAAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205_MULTIEX2-13/13=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.468 C2=0.163
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PD(95.8=97.1)
A:
PF0139015=SEA=PU(0.9=2.1)
C2:
PF0139015=SEA=FE(38.9=100)
Main Skipping Isoform:
ENSRNOT00000045678fB818
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTCTTACAGGCCTGTGT
R:
GTGCTTTCAATGCTCCTTGCG
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]