RnoEX0009387 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20454767-20471282:+
Coord C1 exon
chr20:20454767-20455145
Coord A exon
chr20:20462402-20462452
Coord C2 exon
chr20:20471197-20471282
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCCTGAAAAAGCAGGTC
3' ss Score
2.63
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTCTGACCAGGTTCGGGATCCCATTACCTCATACCTCACAGGAGAAGCTGGGAAGTTCGAAGCAAACGGAAACCACGCAGAAGTCATTCCAGAAGCAAAGGCCAAGGCCTACTTTCCTGAATCCCAAAACGATATAGGGAAACAGAGCATCAAGGAGAACTTGAAACCAAAAACACACGGATGTGGTCGCGCTGAGGAACCAGTGTCGCCCCTCACAGCCTACCAGAAATCTCTAGAAGAAACCAGCAAGCTTGTCATAGAAGACGCACCTAAACCCTGTGTGCCTGTCGGCATGAAAAAGATGACCAGGACTCCGGCTGACGGCAAAGCCAGGCTCAACCTCCAGGAAGAGGAGGGGTCCGCCAGGTCAGAGCCTAAG
Seq A exon
GTCAAAAGCCCGGGCGAAGCGTTCACTCGGATGACCGCCTGCTGTTACAAG
Seq C2 exon
CAGGGAGAAGGCTATAAGGTGAAAACAAAGAAGGAAATCCGGAATGTGGAGAAGAAAGCCCACTAGTGACGGTGACGTCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_MULTIEX1-1/4=C1-C2
Average complexity
ME(1-3[100=100];1-4[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.480 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGACCAGGACTCCGGC
R:
GCTTTCTTCTCCACATTCCGGA
Band lengths:
141-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]