RnoEX0010964 @ rn6
Exon Skipping
Gene
ENSRNOG00000048166 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:RGD Symbol;Acc:1593044]
Coordinates
chr1:261015123-261022376:-
Coord C1 exon
chr1:261022266-261022376
Coord A exon
chr1:261021446-261021524
Coord C2 exon
chr1:261015123-261018586
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTACAGTTTTCTCGTTGCAGTTC
3' ss Score
5.65
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCTGTGGCCATGGAGGAACTGAAGAAAGCCAGCAAAGAGAATATGAACCTG
Seq A exon
TTCTTCTCTGGCTCTCCAGCTGTCACAGTGACACCAATGAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAAAAAAG
Seq C2 exon
GATTCTTTTGAAGGATCTACTTACTACTTCTGTCCTCCACAGTGAAGTTTCTCTTCAGTGGGACAAGTGTTATTTCTGTTCTCAGTGAAGTTTGGACCTGCAGCTTGCTTGCTGCCTTGTGAAAGCCAACTTAAACCCTGACCCGACTGATACCTCTAACCCATTCACTGGATGTCTCTGGAGCTGTGCCTCGAGAGAGTGCTGCACTCTGTGTTTGTCTTTAACCGCAGGAAGCCACTGCCTGCCTGCCCAGCGTACACAGTGCAACAGGTAGCAGGCCAGCTATGCTCACTCAGTGCACTCAGGCTGGTTCTCTTTCTTCAATTAGGACATTTCGTGTTTAATTGCTAGTAATATTTTTTAAAAGCACTGTTGGTCTTAGTGGATTGTTATTATTTTTAACTGGTATTTGAGGCTTTCCTCTGTGTTGTTAGTATTGAGTAACTGTTTATTTACTTGTTTTAAAAGCCATTATATTGAGAGATAATTAAGTGAATTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048166-'22-17,'22-15,23-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=0.407 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGTTCCCCTGCTCCAGA
R:
GCTGCAGGTCCAAACTTCACT
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]