MmuEX0005811 @ mm10
Exon Skipping
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41766588-41774176:-
Coord C1 exon
chr19:41774066-41774176
Coord A exon
chr19:41773050-41773128
Coord C2 exon
chr19:41766588-41770196
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATACAGTTTTCTCGTTGCAGTTC
3' ss Score
5.77
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG
Seq A exon
TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG
Seq C2 exon
GATTCTTTTGAAGGCTCTCTTTATTACTTCTGTCCTCTACAGTGAAGTTTCTCTTCAGTGGGACAAGTGTTATTTCTCTTCTCAGTGAAGCTTGGACCTGCAGCTGCTTGCTGCATTTTGACTTGTGAAAGCCAACTCATACCCTGACCCGACTGATACCTCTAACCCCCTCACTGGATGTCTCTGAAGCTGTGCGTCTGTGGAAGTGCTGTGCTCCGTGTTTGTTTTTAATGTCAGAAGCCACTAGTGCCTGCCCCAGCTTACACAGTGCAGCAGGTAGGCAGGGCCAGCCACACCTACTCAGTGTGCTTAGGTCGGTTGGTTTCTTCAAACAGGATATTTTGTGTTAATTGTTAGTAATATTTTTAAAAGTACTGTAGGTCTTAGTGGAGTATTATTATTTCCAACTGGTATTTGAGGCTTTCCTCTGTGTCAGTAACTGCTTGTTTTAGAAGCCATTATTTTGATAATTAAGCGAATTACAAGTTAAATGCTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.630 C2=0.280
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGCTCCAGAGTCTGTG
R:
GCAGGTCCAAGCTTCACTGAG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types