Special

MmuEX0005811 @ mm9

Exon Skipping

Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41841081-41848666:-
Coord C1 exon
chr19:41848556-41848666
Coord A exon
chr19:41847540-41847618
Coord C2 exon
chr19:41841081-41844686
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATACAGTTTTCTCGTTGCAGTTC
3' ss Score
5.77
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG
Seq A exon
TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG
Seq C2 exon
GATTCTTTTGAAGGCTCTCTTTATTACTTCTGTCCTCTACAGTGAAGTTTCTCTTCAGTGGGACAAGTGTTATTTCTCTTCTCAGTGAAGCTTGGACCTGCAGCTGCTTGCTGCATTTTGACTTGTGAAAGCCAACTCATACCCTGACCCGACTGATACCTCTAACCCCCTCACTGGATGTCTCTGAAGCTGTGCGTCTGTGGAAGTGCTGTGCTCCGTGTTTGTTTTTAATGTCAGAAGCCACTAGTGCCTGCCCCAGCTTACACAGTGCAGCAGGTAGGCAGGGCCAGCCACACCTACTCAGTGTGCTTAGGTCGGTTGGTTTCTTCAAACAGGATATTTTGTGTTAATTGTTAGTAATATTTTTAAAAGTACTGTAGGTCTTAGTGGAGTATTATTATTTCCAACTGGTATTTGAGGCTTTCCTCTGTGTCAGTAACTGCTTGTTTTAGAAGCCATTATTTTGATAATTAAGCGAATTACAAGTTAAATGCTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.919 A=0.630 C2=0.118
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000026150





     
                   









    
Main Skipping Isoform:
ENSMUSP00000129586





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000135293
          









    
Other Skipping Isoforms:
ENSMUSP00000134829
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:97229147-97229225 
HIGH PSI
HsaEX6089793
(ARHGAP19)
Human
(hg19)
chr10:98988904-98988982 
HIGH PSI
HsaEX6089793
(ARHGAP19)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr26:18353466-18353544 
HIGH PSI
BtaEX6100027
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCTCCTGCTCCAGAGTCTGTG

				
R: 
GCAGGTCCAAGCTTCACTGAG

				
Band lengths: 
167-246

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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