HsaEX6089793 @ hg38
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:HGNC:23724]
Coordinates
chr10:97222173-97229874:-
Coord C1 exon
chr10:97229764-97229874
Coord A exon
chr10:97229147-97229225
Coord C2 exon
chr10:97222173-97226132
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTACAATTTTCTTATTACAGTTA
3' ss Score
5.46
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
CGGAAGGTCCTGGGAAATCAGATGATGTCAGAAAAGAAAAAGAAGAACCCTACTCCAGAATCTGTGGCCATTGGTGAATTGAAGGGAACCAGCAAAGAAAATAGGAACTTA
Seq A exon
TTATTTTCTGGCTCTCCAGCTGTCACGATGACACCAACAAGATTGAAGTGGTCTGAAGGGAAGAAAGAGGGGAAAAAAG
Seq C2 exon
GATTTCTCTGAAGGATCCAGAGTTGTCTCCTATGGTCCATGCAGAATTTTCTGTTTAGTGGGCAGGTGTTATTCCTGCCCACAGCAAAGCTTGGACTTGCAGCTTGCTTGCTGCATTTTGAATTGTCAAAGCCAACTAATACCGTGACCCGACTGATACCTCTAACCCCACTCACTGGATGATGTTTGCAAGCTGTGCCTTCTGAGAGAGTGCTTAGGCCCTGTCTCTCTTTTTTAATATTATGGGGAAACCACTAACTATCCAACCAGCTTATACAGCACACTAAGGTGGGCTTCAGTGCTCACTCAATGTGTTTAGGCAGATTCCACTTTTGAAAAAAAATATGAAATGTGTGCTCAACTGCCAGTAATTTTTTAAAAAGCACTGTCCCAGTGGATTGATGTTGTTTTTAATGGATATTTTGGGTTTTTCTCTGTTTTGATAGTATTGGGTATTTGGTTGTTTTTGTTTGTTTATTTCTTTGTTTTAAAAGCCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.926 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTACTCCAGAATCTGTGGC
R:
CTGCAAGTCCAAGCTTTGCTG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains