BtaEX6100027 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGB9]
Coordinates
chr26:18353138-18354182:-
Coord C1 exon
chr26:18354072-18354182
Coord A exon
chr26:18353466-18353544
Coord C2 exon
chr26:18353138-18353190
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTAAAATTTTCTTGTTGCAGTTA
3' ss Score
6.55
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
CGGAAGGTCCTGGGAAATCAGATGATGTCAGAAAAGAAAAACAAGTACCCTACTCCGGATTCGGTAGCCATTGGTGAATTGAAGAGAGCCAGCAAAGAAAATATGAACTTG
Seq A exon
TTATTTTCTGGCTCTCCAGCTGTCATGATGACACCAACAAGACTGAAATGGCCTGAGGGGAAGAAAGAGGGGAAAAAAG
Seq C2 exon
TACTTGTTAAGCAAATTAAAAGCAAGTGTAAACTAACTTGTGAAACCAAGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040427-'10-13,'10-12,11-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.778 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGTCCTGGGAAATCAG
R:
TGGTTTCACAAGTTAGTTTACACTTG
Band lengths:
159-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]