RnoEX0013425 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42035376-42045597:+
Coord C1 exon
chr14:42035376-42035416
Coord A exon
chr14:42040706-42040716
Coord C2 exon
chr14:42045528-42045597
Length
11 bp
Sequences
Splice sites
3' ss Seq
GATAATTAACCAATTCCCAGTTT
3' ss Score
1.77
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TTTTGAGAAATGGCGCTTGGGAAATTGTTCACTGGGAAAAG
Seq A exon
TTTTCTTTCAG
Seq C2 exon
TGAGCCCCAGGCCATGTGCTACATCGAGACATCCAACTTAGATGGTGAAACCAACCTGAAAATTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PU(1.5=27.3)
A:
NO
C2:
PF0012215=E1-E2_ATPase=FE(11.3=100)
Main Inclusion Isoform:
ENSRNOT00000044017fB1767
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAAATGGCGCTTGGGAA
R:
TGGTTTCACCATCTAAGTTGGATGT
Band lengths:
92-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]