RnoEX0013428 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42035376-42045597:+
Coord C1 exon
chr14:42035376-42035416
Coord A exon
chr14:42040717-42040790
Coord C2 exon
chr14:42045528-42045597
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATTCCCAGTTTTCTTTCAGGTA
3' ss Score
6.12
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTTTGAGAAATGGCGCTTGGGAAATTGTTCACTGGGAAAAG
Seq A exon
GTAAATGTTGGAGATATAGTTATAATAAAAGGCAAAGAGTTTATACCTGCTGACACTGTCCTTCTCTCGTCAAG
Seq C2 exon
TGAGCCCCAGGCCATGTGCTACATCGAGACATCCAACTTAGATGGTGAAACCAACCTGAAAATTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PU(1.5=27.3)
A:
NO
C2:
PF0012215=E1-E2_ATPase=FE(11.3=100)
Main Inclusion Isoform:
ENSRNOT00000044017fB1769
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGAGAAATGGCGCTTGGG
R:
TTGTCTAATTTTCAGGTTGGTTTCAC
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]