DreEX0016059 @ danRer10
Exon Skipping
Gene
ENSDARG00000063001 | atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
Coordinates
chr14:45996930-46006728:+
Coord C1 exon
chr14:45996930-45996970
Coord A exon
chr14:45998971-45999044
Coord C2 exon
chr14:46006659-46006728
Length
74 bp
Sequences
Splice sites
3' ss Seq
TACCAGTTTGTGTCTTACAGGTT
3' ss Score
8.86
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
TATTGAGGAACGGCGCCTGGGAGATTGTGCACTGGGAGAAG
Seq A exon
GTTGTGGTTGGAGACATAGTTAAAGTTAACGGCAAAGATTTTGTCCCAGCAGATGCTATACTGTTGTCTTCCAG
Seq C2 exon
TGAACCTCAAGGAATGTGCTACATTGAGACTTCAAATCTGGACGGAGAAACCAATCTCAAGATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063001-'3-5,'3-3,4-5
Average complexity
ME(3_4-4_5[100=99])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(17.6=100),PF121483=DUF3590=FE(23.2=100),PF132751=S4_2=FE(37.1=100)
A:
PF0012215=E1-E2_ATPase=FE(32.4=100),PF121483=DUF3590=PD(30.4=68.0),PF132751=S4_2=PD(40.0=56.0)
C2:
PF0012215=E1-E2_ATPase=FE(10.0=100)
Main Inclusion Isoform:
ENSDART00000091620fB1420
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGAGGAACGGCGCCTGG
R:
CTGTCTGATCTTGAGATTGGTTTCT
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]