DreEX0016060 @ danRer10
Exon Skipping
Gene
ENSDARG00000063001 | atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
Coordinates
chr14:45996930-46006728:+
Coord C1 exon
chr14:45996930-45996970
Coord A exon
chr14:46001456-46001529
Coord C2 exon
chr14:46006659-46006728
Length
74 bp
Sequences
Splice sites
3' ss Seq
GGGCTGCTGGGTAAATGAAGGTG
3' ss Score
-1.15
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
TATTGAGGAACGGCGCCTGGGAGATTGTGCACTGGGAGAAG
Seq A exon
GTGTCTGTAGGAGAGATAGTGCGAGCAGCCAATGGAGATCACCTCCCGGCCGACCTCATCATTCTGTCCTCCAG
Seq C2 exon
TGAACCTCAAGGAATGTGCTACATTGAGACTTCAAATCTGGACGGAGAAACCAATCTCAAGATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063001-'3-5,'3-4,5-5
Average complexity
ME(3_4-4_5[100=99])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(17.6=100),PF121483=DUF3590=FE(23.2=100),PF132751=S4_2=FE(37.1=100)
A:
PF0012215=E1-E2_ATPase=FE(10.5=100)
C2:
PF0012215=E1-E2_ATPase=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGAGGAACGGCGCCTGG
R:
CTGTCTGATCTTGAGATTGGTTTCT
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]