MmuEX0006942 @ mm10
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67776129-67786666:-
Coord C1 exon
chr5:67786626-67786666
Coord A exon
chr5:67778960-67779033
Coord C2 exon
chr5:67776129-67776198
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTAAACTGGGACGTGTAGGTG
3' ss Score
1.48
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TTTTGAGAAATGGTGCATGGGAAATTGTTCACTGGGAAAAG
Seq A exon
GTGGCAGTGGGGGAGATAGTGAAGGTGACCAATGGGGAACACCTCCCGGCAGATCTCCTCAGTCTGTCCTCAAG
Seq C2 exon
TGAGCCCCAGGCCATGTGCTACATCGAGACATCCAACTTAGATGGTGAAACAAACTTGAAAATTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685_MULTIEX2-2/7=C1-3
Average complexity
ME(1-2[99=93])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.126 C2=0.056
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(18.1=100),PF121483=DUF3590=FE(22.0=100)
A:
PF0012215=E1-E2_ATPase=FE(13.0=100)
C2:
PF0012215=E1-E2_ATPase=FE(12.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAATGGTGCATGGGAAA
R:
GTCTAATTTTCAAGTTTGTTTCACCA
Band lengths:
106-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types