MmuINT0021743 @ mm10
Intron Retention
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67776129-67779033:-
Coord C1 exon
chr5:67778960-67779033
Coord A exon
chr5:67776199-67778959
Coord C2 exon
chr5:67776129-67776198
Length
2761 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TTTTCAATTATGAACAACAGTGA
3' ss Score
1.88
Exon sequences
Seq C1 exon
GTGGCAGTGGGGGAGATAGTGAAGGTGACCAATGGGGAACACCTCCCGGCAGATCTCCTCAGTCTGTCCTCAAG
Seq A exon
GTCAGAGCCTCAGAATGGGACAGGGTGTGTGTACGCGGGTCCTCGCCTTAAACCAAAGAACAACTGCACCCAAATGCAGTTGAGCTGGCTCTCCTTCTCTAACGCACAAATGCATATCCTTCTAGATGTGAATTGGAAATACTGTAAAGACGCTTTATGAGTATAGTTGCTGGATGTTCTTTGTCTCTCAGCCGGGCAGATTGAACTCCTATTACGCTCCATAGGAGTCCAAGAGATTTTAATCTCTCGTGCATTGAGTCACGTATGTTTTAACAACATGCCTTGCCTTTAAGGCTTTAGTTATTAATTCTCCAGGATACGGTATGTGAACAGTGTTAAGCTTTTCACGAGACAATCAATCGAAAACCGATTCCATTCTAAGGATGCTTTCTTATTCTATTTTAAATTATTTTACAAGTTCTGTGGAATTTCTGCAGTAACTGCGACTAAAATTTGGGCTTGTATAGGGTTTATAGAGGACCCCTGCACGAGGCTGGATGTCATATATTTTCATACTGCATGCTTTGGGCTCCGTCTTCATCCCAGCTGTAACTTGTGAACCAACGCACATTGCTGTGACCCGTGTCGGCCGTCTGCCGATGTCTGTCCTGTGGTGTGCATCTTGTTTCGTTTTTCCACTTACTAATCATAAAGCTTGCTTTGCCTCTGACCGTGGTTTGTGTCTTGGGTGTTACCATGACTTGCTGACGTCTTTATGAGCTAGCATGATTACTGACTCTGCTGCCTCTTCAGGGCCCTTAGAGCTACTGCAGTCACAGCTGTCTGAAGTCATTGTTAGGAATGTTCCAAATTGGGATGAATTTCATTGGCCTGGCATCAAGTGGAAGTCAGCCACTTAAACTTGCTAATTTCTTAATCCTTTCAAGCTCAATACAAATTGTTTTGTGTGGAGGGCAGTATTAGAAGGTTCTTTCTAGAAGTTTTACCCTAAGACTGGCTTTGGATAAGCATATTTATCAGTAACATTTTAATGAGTTTTACTGCCGAGATTAAAGACTTGGCAGTCTCAGTTGCTGTTCTATTTGTTGCCGTTTTTCTTTGTTAGCAGAGAAATGTGTTTTACAGCCTTTCCAATGACTATGTGGAAATTATAAAGTTGGGCAGCTGCCAGAGTGAGAATAACTATTGTGACCGTGAGTTGAAAATATTTTGGGGTGAATAGTTGAGACTGAAAATATTAATATGGAAAGATTTCTCTGATTGGGAAATAGCAGCCTAGGTGAAAGAAAGCTCGTAGGGAAACCTTGGAATGTGTGAGGTGACTTTAAAATTAATCTATAAAATTTGATTGATGTCTAAGTCTTTAAGTAAAGCTTTTGTTAATTTCAAGGGGACAAAATTAAGTTTATATGCTCATTTCTGGCACTTAGCGCAGTCTGGTTTGCACATGTACAAATTGGAGGTTGATTAAAAAAAATTCCAGTGTTTGCAACTTATAAATTTCTTTTCTATTTATAGTTATTTATCCGATAACAAACTAGGCTACATATTATGTAGCTAAGTGATAATGAGATTGGTTTAAGTTAAGAATACTTTTTGGGTTATCTTCAGAGTGCTTTTTTTTTTATAGATTTAAGGGTTAACTTTTTACAGTCAGGCCACACTCATACATCTGTAGCATCCAAGAAACAAAAAACAAACAAACAAAAACAGTGAGACGGCTATAATATAACTGGAGAACACAGGCCACAGGTCAACACATCTAGAGTTCACTTCAAACCTCAGATGCAGCTGCTTTAGGACAAGGAGCAATATGGCCAGGTGGACTGCTATTTGCTTCTCGGTCAGGCTGGGTTGATGGACCAGTTTGAATAGTGCTTGCTTATATACATGATGACCTGAGTCCAGTCCCTGAGACCCTGCATGAAAAAAAAAGCCCACTTGTGGTGTTGCACTTGTAAACCCACTGCTAAGGAGACAGACACCGGCAGACCCATTGAGCTCACTGACCAGTCAGCCCTGGTCTACTCTGCGAATTCAAGGCCAATGAGAAACCTTGCCTCAAAAATATATGGACAGCACCTGAGAAACCCACATCTCAGCTTATATTCTCACCTCCACACATCTGTATGTGTGCTACTCCACACACATGTACCAGGCCACAAATAACATGCATGAACACATACACACACACCTCTCAATCAAGTTTTTTTTTAATACTAAAAATATAAAGTGTAATGTCCACTTTCATTGTAAAATCCATCCTTTAAAAACAGCCTTGAGTTTTTACTATCACGTGGTCTATGCGATCTTGTGACCAAAGCTAAAAGGCTAAAATAATAAGTACAAGCTTGTAGATGGAGCAGTCTGGAAGTTTTTAATCAACCATTTTGCATAACCAATTTACATGTGGGCCATGAGCATGAAACAGGACATTTCTGAGCTGGAGATAAGTCTGGACGCAGACCTGCTTTACACTGGCAGAAACAGTCTGTGTTGTGCCTACATGGATAAGCGGTTTTAAAATAGGGTGGCTCTTTATGATGATATCTTGAAGACCATTACTGAGTGCTGTCAGGAAGTGGCTTTTGGGGGTCTTCTGGCTGGAAGGCTGATCCATGAGTGCCGTGCATGAGTTGTGCCTCACGCTGTCTTGCCATTAGAGTGAAACCCATCAAGAGGCTAGGTGGCTGTAGCTTTGTCTAGAATAAATGGCTTCGGTGAGTCTGAGCACTTAAGTAAGCTGGTCTCTTCCTTTCCTTTCCCAACTAAATCTTTGTTTTTCAATTATGAACAACAG
Seq C2 exon
TGAGCCCCAGGCCATGTGCTACATCGAGACATCCAACTTAGATGGTGAAACAAACTTGAAAATTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685:ENSMUST00000037380:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(13.0=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types