HsaINT0015336 @ hg19
Intron Retention
Gene
ENSG00000124406 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:13531]
Coordinates
chr4:42590277-42592901:-
Coord C1 exon
chr4:42592828-42592901
Coord A exon
chr4:42590347-42592827
Coord C2 exon
chr4:42590277-42590346
Length
2481 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TTCTCAACTCCAAACTACAGTGA
3' ss Score
2.28
Exon sequences
Seq C1 exon
GTGGCAGTAGGGGAGATAGTGAAAGTGACCAATGGGGAACATCTCCCAGCAGATCTCATCAGTCTGTCCTCAAG
Seq A exon
GTTAGAACCACTGAGTCGTATAGGATGCGTGTATGTGGGTCCTCACCGTAAACCGGAGAACAGTTGCACCCAAATATGGTTGAGTTCTGTGTCTCTTCCTTTAAAACACAAACTTTTTATACTGCTTGGTGATGGACATTTCACAGATGTTTTAAAGGGATTTTTGAATACTATGTTGACTGATGCTTGTCCTTCAGCTGGGCAAATTGAACTCCTGTTGTTATCAATAGGAGTCTAAGAGGCATGACAGTAAAGGTAGATTTTAATTTCCTGTGCACCATTAATATATATTCGTATTTAATAACATGCCTAAGTACTAAGGCTTAATTTATTATCTCTCCGGGATATTATTTTGAATAATGTTAAGCTTTTCATGAAACAGTCATTGAAAATTGATTAGATTATAAACATGTCTTATTCTTGTATTTTAAATTTTTCTGTAAGTTCTGTAAAATCCTTCCAGCGATTGTGACTATAATTTGGGCTCATAGGGTTTATAGAGGACCCCCTGCACAAAGCTGGATGTTGCACATTTTGTACCGCATGCTTTGGGATCGACTTTTATCCCACTTGTATCTAGTGACAAAGTGCACGTTACTGTGATCAATTTCAGCTGTCTACTAGTGACTGTATTGTGATATGCATCTTGTTTCATTTTTCACTTACTAATCAAAAAGCCTGCTTTGCCTCTCTTGACTAGTTTGTGTTTTAGATGTCATCATAATTTGCTGAAATATTTATGATCTAGCATGATTCCTTATCTGAGACTTCTTGCTGCCTTTTCACAGCACTATTAAGAATTGCTTCAGTAACTGCTGTCCTAAGTGATTGTTGAGAATGTTCTGAATTTCGATGCTTATTTTATTACCCCAACTTCAAATAGAACTTAGCCATTTGAACTTCCTAACTTCCTAGCCATTTAAAGACCTAGATAAGTTACTTTATGCAAAAAAAAAAAGTAGAATTAGAATATTATTCTAATTGTCAGAATATGGAATCAACATTGTCATTTAGTATTTTCTTTGTCATCGTGCTTCTATATTATCAGGTGTGTTTTATAAATTCATAAACTATGTTTCAAATGTATACATAAGTAAATTACAAATTTCGAGCAATTTCCAGAGCCAAATTGCTATTGTGACAGTGATTTTAAAAATAAAATTTTGAATAAGTTATAGAGTGAAAATATAAATATTGAAGGACTTAATTTTGGGGAAAAGTAGCAGCTTTTACGAAAGAAAGCTCATAGGGTAAATTGAAGAACCTGCAGAGCTACTTTAAAATGAATCAGTAAAATATTTTTGATTAATGTCTATGTGTTTAAGCAATTTTCACAAATCTTCGGGCCACAAAATTAAGCTACATGCCCATTTCTGAAACTAGGAATAGTCTGTTTTGCACATGTACAAGTTGGAAGTTGATTAGAAAATTCCAGGTGTTTGTAATTTGTAAATTTTTTTCTTTCTAGCTTTGAGTACACATGCTTATAAGAGATTACATTTATAATACTTATGTGATATTAGTAAATTAAGCCTATTATATAACCAAGCATTAATTAGATTAGAATGCTTTTCTTTAGAATTAAGGATCAGATTATACAGTTGGGCTACAAACTTAGATGTCTGTAGTTGCTGGGCAAGTCAAATCAGCATGTGAAAGGGAAAGATAAGACAGTCTGGGCTGTGGTGGTGTGATAAAACTGGAGAACATGGACCCCTTAGGCCAGCCGCCACACACCAGATTTTACTAAGACACACTGGTGGGGAACCCATGAAGTGCATCTTCTAGGTCAAGGAGCAATATGGCCTAGCTGACTGATTTTAGTTTTAGTTTTTACCGCTGTGAGAATCTCTCAAGCAACTTTAATAGGAGAGCAGGAGTGGAAAACATAGAGGGAGAAAGCTATATATCCGCTTTCATTGTAAAATTTGTTCATATTACTTTTTTTAAATAACCTTAAATTTAAATATTATGGTTTATGTGATCCTATTCATCATAGCTAAAAGGGTAGTAAATGCAGGTTTGTAGAACTAGCAATCTGGAATTTTCTCATCAACCACTTTCTTAACCAATTTACATGCGTGCCATGAGCATGAAATCTCATGTGGTGTTTTTGAGCTAAAGATAAATCCGGACACAAAACTGCTTTACATTTCAGATACAGTCTGTGTTGTGTCTATGTGGATGAACAATTTAAATATAATGTGCAAATCTATTCATTTGCATTATCTTGAAGACCATTACTGATTGTTGTCAGGAAATTGCTTTTGGGTCCTTCTGGCTGAAAAGCTAATCCGTGAGTTGTCATGCATGGGTTCTGCCTCACAGCATCTTGCTGTTAGAATGAAAATCATCAAGAAGCTAAGTAACTATTACTTTGTCTAGAACGAAAGGCTTTAGTGAGTCTGAGCATTTAAATAAGTTATTATTATGCTTTTCTTCCCGCACTAAATCTTTGTGCTTCTCAACTCCAAACTACAG
Seq C2 exon
TGAGCCCCAAGCCATGTGCTACATTGAAACATCCAACTTAGATGGTGAAACAAACTTGAAAATTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124406-ATP8A1:NM_006095:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(18.8=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)