BtaINT0023896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63060193-63066695:-
Coord C1 exon
chr6:63066622-63066695
Coord A exon
chr6:63060263-63066621
Coord C2 exon
chr6:63060193-63060262
Length
6359 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CATTAAAAAAAAAAAAACAGTGA
3' ss Score
-2.62
Exon sequences
Seq C1 exon
GTAAATGTTGGAGATATAGTTATAATAAAAGGCAAAGAGTATATACCTGCTGACACTGTACTTCTCTCATCAAG
Seq A exon
GTAGAGATACCTACTGATGCTCAAACAGTGTAGAGGATGGTTTCTCTACCCTGCATTGACCTTGTGATTTCTCCAAGGAAATAAGGAATAAACGAAGAATTTTAAGCCTCTCCAATGATTTTGAACTAAACGTTAAAAAGATTGATTGGACTTAGAGGACTCTTTCATGTTTGCCATATAGAATAAGTGATAGGTACTATGCTTTAAAATTCAGAAATTATAATTACAGTTAAGAGTCAACTCTCCCTCTGAATGTGTTCAGATCTGTTTGTATAGACTACTAACTCCTGTAAGATTTCCTATCACTTATTTTATATAATACATGGATTGGGTACTGTTGATTTATCTTGCAATCTTTGTTCGTGATAAATTCCTTTATGATGCATTCATGTATCCCTCCAAAGTTTCTTGATCTTTATGGTGCATTGGTACAAGAAAATGGATAAATGACTTCTTTTTTGTCATCATGTCTTTTGAAATATTATACTCTTCCAACAAAAATTAAAGCACTTTTTTCTTTCTTTTAAGTTCTTTCTTACTGAATTTAGATAATTTTTGTTTTGCTTGTATTTAAAATAGTCATTAATTGGTCATATGGCACTGTTACCCTTTAAAGAATGTGACTTTCAAATGGCTTTAGGCTTAAAAACTGTAAAGCTAGTCCTAATATAAATTAAGAAAAATGTTTTTACTATTTTAGAGGTTGTTTATCATCATTTCCTTGGACAGTTTTATTTGTAAAATCCACATATAAATATGGACAGTGTCCTTTTTTTCAAAATCTGTTTAATCAGGTCATTATTTAAACTGATTGAATTTATGACAAATTAGGGAAACTTAATTGAGCAATAAGAGTTTTCTAGATATTTATAGAAGTAAGTCTACAGGTAGTTGAAGTAACTATAGTAATTTTTTTGTATTTTATAGCTGGGAGCTTTTGGTGCCAATTACCTATTGGTGGTCCCCCCCCCCAGAAAGATTAAAATTAATAGCTTTTAAAACCAACCTGTATGCTTTTAGTTACCTTTGCTTCTAGCTTTATCAGGGCAAGTTTCTAAAACTGAAGGATGCTGGTAATGGTCCCTGGAGAATGGGTCAACAGTACACTTAATGTCACTGTCAGGTCCTAGAGAGCTTTGCTTAGAAAGCAAATCCCAGGGTTCTTATCTTGGCGTGGTGATTTTGAACCAGAATTACTGTCTCAAACCTTGACTTCACATCTTTCAAAGTGAGGAAGATGGATTAAATGATCAGACTCTTAATACTCCCTGATTCTGCTTTCAGTTTAAGCTGATAGTCTTTTAAGAATGGCTAACCAGCAGAATGATACGCACTTGGTGGTACTAAGTAAAAGTTTGGTGGATGTAATGAATGATGGACCATCTGAATGTCACACAACAAAGTTCAAAAGGATAGTGAAGCATTCCAGCACTTTAGGAAACTTCTGATATTTTCCTGATTAAACTTATTATAGAGACATAACTTATCATAGAAATCATCATATGCTGAAACATTAAGTATAATTTTCATTTTTATGTGCTCAGAAATATGAAGATAATTGACTATGCTACCTCGAATTTATATTTAATTCTAAGTTGAAAGTTCTTAAAATATTTTTCATCTGTCTCTATCCAATCCAAACTCCTAATAAGCTATACGTTTGTGTTTCTTAAACTTGAGGACATTTTTACAGGATTTCTTTTCTCAGCACTAAAAGCGTTTATTGGTGGCTGTCAATATTGGTAGATCAAAATGGTTTCTGTATCTTAATATACATATATAATGATTAACTTCCTTCAGATGATTAATCTTAAAAAGATTATCTGATTCACTGCTTTTTGATATTGAATTTTGTGCTATTAAATATTTCTACCTAGTGACAAAATACCACCTTTCTGGGGGTTTTATTGCTTTTTAAATTTTTTTTTTCTCAAACTATTTTTGCATTACTTGGCTCTTGTGAACCTACATTAGCCTCAATAAGTAGGTAGAAGCTTTTGCCACCATTAACAGAAAGATGATTTTGACTTTGTCTTGTTTTCAGTCATTTCATTTTACCCACTGACTGGGTCAGGATTGGAATACCTAACTCCCAATCTAGCATCTCATTATACTACCCTGTCCCCTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATCAGAATATTTTAAGGAATATTTTTTTAGTATGTGTGTAGGGGGAGAGATAGTACAGTATACTTTGTTTTTCAAAAGCCTAAAAGTAGTTTTCACCATTATTTCTTTTCTTCTTGGATAGGAGTGGATATACAATAGATGGCAAGAGAGTGAGGAATTGGAGAAAGGAAAATCTATTAGATAAAGTAGCTCTCTATATAAAAACATGTTTTTATTTAGTTTGCTCAGATATGCTTATGAGTAAAATTTTAGAAATCAAAAGTTTCTGTATTAAAAATTGAAAATTGGGCTTAAAAGCAAATAAGTGATTCTGAAATATTCCATTTTCTTGTGCCTTTAGACCTGATCAAAATAAGTTTTGAAAAAATTGGCATTAGACATTTTTATTAACATGTATTATTTTCTGTAATAATTTCAAACTTTCTGTCTCTTTTGTCCATTTGTTTGTTTTTTTTTCCCCCTCTGTTATTCATTTTTTTGTTTTAATTATTTTAAACTGGGACCTGTAGGTGGCAGTAGGGGAAATAGTGAAAGTGACCAATGGGGAGCATCTCCCAGCAGATCTCATCAGCCTGTCCTCAAGGTTAGAACCACTGAGTTGTACAGGATGTGTGTATGTGGATCCTCACCCTTCACCAGAAAGCAGCTTGCACCCAAAGATCGTTGAGCTTTGTATCTCTTCCTTGAAAACACAAACATTTTATACTTCTTGGTGATGGATATTTCACAGATGTTTCAAAGTCCTTTTATGAATACATTGTTGAATGATGTTCATCCCTCGAGTGGGCAAATTCAGCTCCTGTTGTTATCAACAGGAGTCGGAGTCCATGAGGCATGCCACTGAAGGTAGATTTTAATTTCCTATGCATCATTACTATATATTCATTTTAACAACTTGCCTAAATACTAAGGCTCCATTTAGTACCTCTCCAGGATACTGCTCTGAACAATGTTAAGATTTACATGAAAAACTGTTATTGAGAAATTTTTATAATTTTAAACATTTGTCATATATTTGAGATTTTGTACAAGTTCAGTAGAATCCCATAGCAGTTGTGGCTATAATTTGGGCTTGTAGGGCTTACAGAGGACCCCCTGCACAAAGCTGGATGTTGTACAGTTGATACTGCATGCTTTGGGATCAGTATTTATCCCACTTGTAACTCGTGACAAAGTGCACGTTACTATGATCAACCTCAGCTGTCTACTAGTGTCTGTATTGTGATAAGCATCTTGTTTCATCTTTCCACTTACTAATCTAAAAGCCTGCTTTGCCTTTCGGTAGTCTGTGTTTTGAATGTCATCATAATTTGCTGAAATAATAATTATCTAGCATGATTCCTTATCTGAGACTTCTTGCTGCCTTTTCATAACATTGTCAAGAACTCCTGCAAAAACAGTTGTTTTAAGAGATTAAGAATGTTCTGAATTTGGATATATGTTTTATTTACCCCATTTCAAAAAGAAACCCGCCATTTAACTTTCTAACTTGCTTGCCATTTAAGGTTCTAGAAAAGTGGTTTCATGGGAGGAAAAAAAGACCATTATTCTCATTTGATGTGAGAATGGCCTTGGCTATATTGATCAGTAGAAATTTAATGCTTTTCACTGTTAAAATATGGAGTTGGCAGTGGTCATTTAGCATTTGTCATCCTTCTGTATTATCAGAAGATATGTTTTTATAAAATTTTATAAACCATTTTTGAGTGTATACTTAAGTAAATTACAAATTGGGAGCAAGTGATAGAACTAAATTACTATTGTGACAGTAATAAAAAATAAAACCTTAATTGATAAAGTGAAAATACAGATATTGAAAAACTTATCCAGTTGGGAAAAAAAGTATCAGCTTTATGGAAGAAGAAAAAAAAAGCCCGTAGAGAAATTAAAGGACTTGTGAGTTTACTTTAAAACGAATCTGTAAAATATTTGATTAATGACCACAAATTTCAGTATTTTTCACAAGTCTTCAAGCTGTAAAACTAAGCAGTGTGCTCATGTCTGAAACTCAGAATCTTCTGCTTTACACATGTATAAATTGGAAGTTGATTAGAAAATTCCAGGTGTTTGTGACTTAGAAATTTCTGTGAGTATACATACTTATCAGAAATTACATTCATAGTTACTATATGATGTTAATTGATTGGCTTTTCATATAAGCAAGTGCTGTTAAGATTGACTTAACTTAAAAATGCTTTTCCTTATAGTTGAGGATCAGATTATACAACAGGGCTGCAGACTCACCTGGCTGTAGTTGCTGAGCAAGTAAAAGTAGCACATGAAGGGGCAGATCACAGGACATTCAGGGGAGTGTGCCTGTGATAACACTAGAGAACGGGGCCCCTTAACACCAGCCACTGCACAATAAACTTGACTAAAACACTCTGGTGAGGACCCATAGCATGAACCTTCTAGGTTCAGGTCATGGCCAAGTTGGCTGATTTTTTGCTGCTTCACTAATCTCTGAAGCAACTCTAAGAAATAGAACAGAAAAAATAAGGGAAAGAAAGTGTATATCCACTTTCACTGTAAAATATGTTCATACAGTTTTTTAAAGTAGCCTTAAAATTTGAATATTATGGTCCACATAAGCCTATTCATTTTTTCTAAAGATGCAGTATCATACAACCCAAACGTGCAAATGCAAGTTTATAGAAGCAACAATCTGGAATTTTCTAATCCATCTCTTAATCAATTTACATGTGGGCTATGAGCATGAGATCTCACTTGATATTTTTGAGCTAAAGATATGACACAAAGCTGCTTTACATTTCAGATACAGTCTGTGTTGTGTCTATATGAGGAAAGATTTAAGTATAGTGTGACAAATCTAATTATTTACATGATCTTGAAGGTCAGTACTGATTGTTGTCAGGATATTGCTTTGGGGTCCTCTGGCTGAACATCTGATCCATGGGTTGTCATGCATGGGTTCTGCCTCACAGCATTTTGTGGTTAGAATGAAAGATATCAAGAAACTAGGTAACTAAACCTTTGTTTACAATGAAAGGCTTCAGTGAGTCTAAGCATTTTAAATAAGTTATTATTATGGTTTCCTTCCCCAACTAAATCTTTGTGCTTTTCCATTAAAAAAAAAAAAACAG
Seq C2 exon
TGAGCCCCAGGCCATGTGCTACATTGAAACATCCAACTTAGATGGTGAAACAAACCTGAAAATTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156:ENSBTAT00000014818:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.8=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]