DreINT0035666 @ danRer10
Intron Retention
Gene
ENSDARG00000063001 | atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
Coordinates
chr14:46001456-46006728:+
Coord C1 exon
chr14:46001456-46001529
Coord A exon
chr14:46001530-46006658
Coord C2 exon
chr14:46006659-46006728
Length
5129 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
AATGGTGCTGTTTATTTTAGTGA
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTGTCTGTAGGAGAGATAGTGCGAGCAGCCAATGGAGATCACCTCCCGGCCGACCTCATCATTCTGTCCTCCAG
Seq A exon
GTCAGGAACGGCTCCGTTTGCATGCGGGCCGGGTGGGAAGGGGGCAGAGGGTGCACAGGTGGAGAGAATCTGTTAACCTTAATGGTCCCGTTGTTTTCTCACTTGGGCCTGATGCTTCTGTGCTTGGTCAGGATTTGATGCTATTTTATTAGTTATGCCAAAAAAAAAACTAGGCTGTGATTTGATATTGTTGCGTATTAGCGATTGGTGATCATACACCAGTGGTGGGCAAACTTTTCAGACCCGATAGCCACATCAAGTTTTGCAAACCAAGTGAAGGGCCACATTTCAAATTCTTCAAAAAATAACTTATTCATAGTGGCAGTGTGCTTGGAACACGTAATATCAAACAGACACGTTACATTAACACAAAACAGATTTTAATCGTTAGTATTGAGTTGAATTTACAAATTAATTTGCACTGCTATTTATATTTATCATCACTTATCAATCATCATAAAACAATAAAATCATTTCTTTTTAAATATAATAATAATAATAATGTGGGTTTTTTTTACAGTGGAGAATAGAAAAGATATTGTCTGATAGAAAAAATATCTCATTAACACATTAAAAATAATTCCTATAGTTTACTATTCAATCAAATTTACATTCTAATTTGCACTGCTTTTAGAAAATATACAGATCAATCATCATGAACCTTGATAAAAGCACACATCTTTGATAAAAGAACTTTTTAAAGTGGATGTATGCATGGTAAATATATTCTATGACAAAAATGACCACATTTACCATGCAATTATTATATAATTTGAGTCTAATTCACAACAATCTTATTTGAGCTTGAGTTAATGTGCTCATATCAACCATTATAAAACTATGCAACAAAACGGAAGAAGAATCTTAGCCTTTGCTATTCAAAGTCATGTTATTATGAGTGTGTTAATGTGAACAATGAGCCTGAAAATAAGGTTATATTAATATCAACAGCAACACTCTCGCAAAATACCCAGCTGATTCAGTCGTTGCCTAGCGACATACTTTTTTTTTTCTTATCAACAAAAAGGCAGCACCTCTTGTTTTTCGAACGTAAATGTGTGGCGGTGTGATTGTGGTCTTGGGTTGTGGTCTTTAAAAACAGCAATACTTTCTTGGCATATTAGACATACCGCTTTCTGTCTGATATTGGTCAAGAAGTATTTTGTTGTCCATTCTTCCTTAAACACACAACATTCAGAGTCAATTTTTCGTATTTTTTTGTCTCGTCATTTTCAGTTATTAAGTGCATTTTAATATCCAAGAGCGTGTTCTAATTCTAACTGTATCGCGTGCAATACTGCCATCAAATGGCGTTCACTTGTATTGCATCATTAATTTTCTAATTCTGAAACCAAACCGTTACTCAAAAGCAGAATTTTAAAAACTCCCTTGCGGGCAGGATGAAAGTGTTCAGCGGGTCGCATATGGAAGCGGGTCATAGTTTGCCCACCTCTGTTATACACACTACCTGACAAAAGTCTTGTTGCCTATGTATCCTGGTTTTTGCTATCAGAAGTGGCTTATATGAAAGGCAAAGGCCTCTAGATTACGCTTATTTACCAAAATAAAATATGATCAGGCTTTGATTTTTAATTAATAAGGACATAAAGGTCTGACTTTGCTTAGACAAAAGTCTTGTCACTTAACAAAAATAAAGTACAGTGTAGAATATAAAGTCATGGAGCAGTGGAAAAACAATGAATATTGTGTATGACTCCCATGAGCTTGGAGGACTGCATCCATACATCTCTGTATGACTCAAATCACTTATTAATAAAGTCATCTGGAATGTTAAAGAAAGCGCTCTTGCAGGACTCCCAGAGTTCATCAAGATTCTTTGGATTCATCTTCGATGCCTCCATCTTATCCCAGACATGCTCAATAATGTTCATCTCTGGTGACTGGGCTGGCCAATCTTGAAGCACCTTGACCTTCTTTGCTTAAAGGAACTTTGATGTGAAGTATGAGAAGGTGCTAGAGTTAGGAGGGGAGTATTTATTTTCTTAGAGAAGGTTTCTAAAGGTGATTTGTCAAATAAAAGATGATATTTAAAAAAAATAATAATAATTTGGAGTGACTGCAAAAATGTGTCAGGGGAAAATGTGCAAAAAAAACCTCCCTAAAAAACAAAGTTCTCAAAAGATTCCTAAAATTAAGCACCAAAAATTTGAGTGGTTCAATTCCCAGCAGAAAGACGTGATGAAGCTCTTTCTTTAACTGGAGGCATGCTTTACAGACCTCTGCTTTGTGCTGGAGATGCTTCAGCTTGTCCACACCACACACAAACAAAGCTCTTCTCTAACAGCTGGAGAAAAGGCCTATTGAATGACTGTAAAGTCAGCGCTGTTGGCACAATGCATGGCTTCAGCTGGAGCTCAGACTCTCTGCATGCGCTCACTTCTCCACAATCTACAGTACTGGGATCAACCTTTATAGAAACACACACTGAAGAAATCAGATGCGCGACTGAATAGTTTTTTTTGTCTTTTAGATAACAATAACTTTCACATCTCATTGTTCAAGCCTGCTGTTGTTTGTTAAAGGAGAGATTGTTTAACAGCTTTGGCCCTCGTCATCCTGCTTTTGCTCATCTCAGTAGCTGAATGTTCATTTGTCTGCTGTGCTTCATCTTTCCTTTGTTGCATGTTGCTAAATATATAATTAAAAAGCAGCAGAATGCATGGCTATAAACAAAGATGCATCGAGTGAAAGTGAAAAATGAAGGAACTTAGTCCCATTAGAGCAATATGTTTTCATTTTCTGCTCAAGTACTAAAATGCTTTATGCGTTTTGGGGGAAATATGCCACCCTGTGGATTTTTCGTGCTGAAATTAGCAATGAAACACTACTTTAGCTGAACTTTTATTGTAAACGAGCATCTTTGGTTATGGGGCTTCATTTAGCTGTTTGATTTTGTTATGTGACCCAACCACCGAATCTTTTTAAATTGTTAACTTATATAAGGACATTCGGTAATGTTGCTTTACATCATAATTCGATATTTTATAGATGTAGGTTGAATATTGGGCGTTCGGCTTTTGTATGTATTTGATTGTCTCTTATGCTCACCAAGGCTACAGTTATTAGATAAAAAATACAGTAAAAACACTAATATTGTAAATAGTATTGGTTTTTATAAAAAAAAAAAAAAACATTAAATTGCCATAAATAAGTTTAATGAACTTAATTTTCAGCATCATTACTTCAGAAATTATTCTGATTTCTTATTTATTTATTAAGGGTGCTTTCACACATGTGGATTAATTCTGTTGTTCCGAAACAGGCATTCAAATTGTTACATTGTTGCGCTTTGTTCATGGTGCGGTTCGCCTTCGTGCGGCAAAGTTTCTAAACGAACCAAAATAAGCTGAATGTCCTGTTCAGCTGTCATGTGTCTTTACTTTAATTTATGATGATGAGCAATAAGGCAATGTAAGCGAAAAGCTGTGCTTTAACTTTGAATGGTGACACCCACAGATATTGTCACCAAATCAGAGGTAAGACTTGCTCATACATAGCAGTTGGCTAATAAATTGTAAGTTTTACATTATAGAGAGGAATAACAGATAAACCAAGACTGCTGTCTGGTCAATTTTCGGATAAACAGCTCTTGTTAATAGTTAGCTTGCTTTCACTTTCATATTTGACATGAAACACACATCTACTATTTTCATATAGCCATATGCCAATTACGTATCCATAATACTCTGTGATAGAGCCCTGTTCGGATCGTATTGCTTTCTCTATACAATCCATCCGCTCCAGAGTTTGTTTCAATCAAGCCGAGACCACCTCATTCAGGCAATCTTAGACTAATTGTTTTGGTGCGGATCCGAGCGCTGTTGCTGGATATGCAGAATGAACCGCGCAAGCTGGGGGAAACGCGCCAGGTTACGAAACAAATATCTAGCTGTGAAAGCACCCTAAGAAACATTTATTATTATCAATGTCGAAAATAGTTATGTAAAATAGTGCTGATTAATCTTTCTGATGGAAAATGAATCCAAGATTATTTAATGGAGAGATTAAAAGAAAAAAAATACACTATTGTTGACAAATTTAAATAAATGTATATATATTGTGGGTACGGAAAGTATTCAGACCTTTTAAAATTTTTCACTCTGTTATATTGCAGCCATTTGCAAATCATTGTAGTTTATCAAATGGCTGTGATTATGTAATGTAATTTAATGTACTGTGTATTTATATAGCGCATTTATTGATTATGGACATACACCCAAAGCGCTTTACAATCATAAGTGGAATCTCCCCACTACACCATTAGTGTGCAGCTTCTACTTGGATGATGTCATGGCAGCCACAGGACAACAGCGCCAGTGTGCTCAGCTCAGCTATAAATGGAATGGATAGTCAGTAATACAGCCAATTCGGTTGATGGGGATGATTGGGAGGCCATGATCATAAGGGCTGATGGAGGGAATGTGGCCAGGACACCGGGTCTACACCCCTACTCTGTATGAGAAGTGCCATTGGACAGTAAGGGTGGTTTAACGCCCCTTCCGAAAGACGGTGAAAGTCCCCTTCACTTTACTGGGGCAATAGGACTCGCACAGACAACAGGTTGAACTTAGTTTTCCCGTGTGGTTTTCACTGCTTAGCTTTAGTGAGAAACCGGGCTTGGGGTGGAGGCTGATATGGCTGTTGCATAACAAATGGCTGCGATTTATAAGAGTGAAAAATTTAAGGGGGTCTCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATGTATATATATATATATATATATATATATATATATATATATGTATATATATGTGTATATATATATGTATATATATATATATATATATATATATATATATATATATATATATATAACATTCTAAAGTAATCTATAAGTAATATAAATATTATACAAATAATATATGGACATATAATATAAACAGTATAAATGGGTAATATAACTAAATTTCTAAAACATTAACTACAAAACAATCCACTGCTTGAATCATAAGTTATATTGTATTCAAATGCTGCTTTTCTCATAATGGTGCTGTTTATTTTAG
Seq C2 exon
TGAACCTCAAGGAATGTGCTACATTGAGACTTCAAATCTGGACGGAGAAACCAATCTCAAGATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063001:ENSDART00000091620:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(10.5=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]