GgaEX0020993 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70068381-70074028:+
Coord C1 exon
chr4:70068381-70068421
Coord A exon
chr4:70072000-70072073
Coord C2 exon
chr4:70073959-70074028
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCAAACTGGGATGTGTAGGTG
3' ss Score
1.7
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
TACTACGAAATGGTGCATGGGAGATTGTCCACTGGGAAAAG
Seq A exon
GTGGCAGTAGGGGAAGTAGTGAAAGTGACCAATGGGGAACATCTCCCAGCTGATCTCATCAGTCTGTCGTCAAG
Seq C2 exon
TGAACCACAAGCTATGTGCTACATCGAAACATCTAACTTAGATGGTGAGACAAACTTAAAAATTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(17.8=100),PF121483=DUF3590=FE(22.0=100)
A:
PF0012215=E1-E2_ATPase=PD(1.4=25.0)
C2:
PF0012215=E1-E2_ATPase=FE(16.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACTACGAAATGGTGCATGGGA
R:
CTGTCGAATTTTTAAGTTTGTCTCAC
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]