Special

FBgn0259221 @ dm6

Biotype
protein_coding
Gene Symbol
CG42321
Description
The gene ATPase 8A is referred to in FlyBase by the symbol DmelATP8A (CG42321, FBgn0259221). It is a protein_coding_gene from Dmel. It has 15 annotated transcripts and 15 polypeptides (12 unique). Gene sequence location is 2R:13414978..13439051. Its molecular function is described by: ATP binding; magnesium ion binding; ATPase-coupled intramembrane lipid transporter activity. It is involved in the biological process described with: phospholipid translocation. 25 alleles are reported. The phenotype of these alleles manifest in: larval multidendritic class IV neuron. The phenotypic classes of alleles include: viable; partially lethal - majority die; some die during pupal stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-24 hour embryonic stages, during late pupal stages, in adult male stages.
Coordinates
chr2R:13414978-13439051:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
65.35
95.84
0
Alternative 3'ss
45
chr2R:13425994-13426038
-
16.03
70.97
0
Alternative 3'ss
246
chr2R:13425994-13426239
-
18.62
46.75
0
Alternative 5'ss
0
NA
-
86.71
36.28
0
Alternative 5'ss
4
chr2R:13438928-13438931
-
12.27
36.28
0
Exon Skipping
83
chr2R:13415875-13415957
-
65.85
81.55
0
Exon Skipping
293
chr2R:13417536-13417828
-
11.09
86.72
0
Exon Skipping
32
chr2R:13416575-13416606
-
35.27
87.1
0
Intron Retention
259
chr2R:13415616-13415874
-
14.38
55.1
0
Intron Retention
3029
chr2R:13415958-13418986
-
26.44
64.58
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000124406 ATP8A1 1-to-2
Human hg38 ENSG00000132932 ATP8A2 1-to-2
Human hg19 ENSG00000124406 ATP8A1 1-to-2
Human hg19 ENSG00000132932 ATP8A2 1-to-2
Mouse mm10 ENSMUSG00000021983 Atp8a2 1-to-2
Mouse mm10 ENSMUSG00000037685 Atp8a1 1-to-2
Mouse mm9 ENSMUSG00000021983 Atp8a2 1-to-2
Mouse mm9 ENSMUSG00000037685 Atp8a1 1-to-2
Rat rn6 ENSRNOG00000008053 Atp8a2 1-to-3
Rat rn6 ENSRNOG00000034200 Atp8a1 1-to-3
Rat rn6 ENSRNOG00000052298 AABR07014974.1 1-to-3
Chicken galGal4 ENSGALG00000014236 ATP8A1 1-to-2
Chicken galGal4 ENSGALG00000017106 ATP8A2 1-to-2
Chicken galGal3 ENSGALG00000014236 ATP8A1 1-to-2
Chicken galGal3 ENSGALG00000017106 ATP8A2 1-to-2
Zebrafish danRer10 ENSDARG00000077492 atp8a2 1-to-1