BtaEX0005030 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63060193-63072576:-
Coord C1 exon
chr6:63072536-63072576
Coord A exon
chr6:63066622-63066695
Coord C2 exon
chr6:63060193-63060262
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATTCCCAGTTTTCTTTCAGGTA
3' ss Score
6.12
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTTTGAGAAATGGTGCTTGGGAAATTGTGCACTGGGAAAAG
Seq A exon
GTAAATGTTGGAGATATAGTTATAATAAAAGGCAAAGAGTATATACCTGCTGACACTGTACTTCTCTCATCAAG
Seq C2 exon
TGAGCCCCAGGCCATGTGCTACATTGAAACATCCAACTTAGATGGTGAAACAAACCTGAAAATTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[97=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(4.8=100)
A:
PF0012215=E1-E2_ATPase=FE(8.8=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGAGAAATGGTGCTTGGGA
R:
CTGTCTAATTTTCAGGTTTGTTTCAC
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development