HsaEX0007059 @ hg19
Exon Skipping
Gene
ENSG00000124406 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:13531]
Coordinates
chr4:42590277-42602535:-
Coord C1 exon
chr4:42602495-42602535
Coord A exon
chr4:42596306-42596379
Coord C2 exon
chr4:42590277-42590346
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATTCCCAGTTTTCTTTCAGGTA
3' ss Score
6.12
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTTTGAGAAATGGTGCTTGGGAAATTGTCCACTGGGAAAAG
Seq A exon
GTAAATGTTGGAGATATAGTTATAATAAAAGGCAAAGAGTATATACCTGCTGACACTGTACTTCTCTCATCAAG
Seq C2 exon
TGAGCCCCAAGCCATGTGCTACATTGAAACATCCAACTTAGATGGTGAAACAAACTTGAAAATTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124406_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(10.2=100)
A:
PF0012215=E1-E2_ATPase=FE(8.8=100)
C2:
PF0012215=E1-E2_ATPase=FE(18.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAATGGTGCTTGGGAAA
R:
GTCTAATTTTCAAGTTTGTTTCACCA
Band lengths:
106-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)