MmuEX0006941 @ mm9
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68167368-68177905:-
Coord C1 exon
chr5:68177865-68177905
Coord A exon
chr5:68172227-68172300
Coord C2 exon
chr5:68167368-68167437
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATTCCCAGTTTTCTTTCAGGTA
3' ss Score
6.12
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
TTTTGAGAAATGGTGCATGGGAAATTGTTCACTGGGAAAAG
Seq A exon
GTAAATGTTGGAGATATAGTTATAATAAAAGGCAAAGAGTATATACCTGCTGACACTGTCCTTCTCTCGTCAAG
Seq C2 exon
TGAGCCCCAGGCCATGTGCTACATCGAGACATCCAACTTAGATGGTGAAACAAACTTGAAAATTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(18.1=100),PF121483=DUF3590=FE(22.0=100)
A:
PF0012215=E1-E2_ATPase=FE(8.8=100)
C2:
PF0012215=E1-E2_ATPase=FE(8.5=100)
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAATGGTGCATGGGAAA
R:
GTCTAATTTTCAAGTTTGTTTCACCA
Band lengths:
106-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: