RnoEX0013658 @ rn6
Exon Skipping
Gene
ENSRNOG00000016998 | Atxn1
Description
ataxin 1 [Source:RGD Symbol;Acc:3624]
Coordinates
chr17:19417440-19520591:+
Coord C1 exon
chr17:19417440-19417560
Coord A exon
chr17:19463236-19463362
Coord C2 exon
chr17:19518590-19520591
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGGCAGTCT
3' ss Score
2.58
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTATTTCTAACCTCTCTGTGAAAGAAAGACAACACCAGAGCCTGGGCGGCCCAGTTGCTGAGGGAAGTTTCCATGGTGAAGTCTCAGGGAGGCTTCCTGGGAGCAGAACATAGTGAATGCT
Seq A exon
TCTACCCAACCATCTCTGGAACTTCAAAAGAATAGCCTTCAGCAGTACACCAGGGCTGCTGTACTCTACCTCAGAAGGGGGATAAAAAACAAAGGTGTTTCAGCCACCATTGGTTCTGCACACAAAG
Seq C2 exon
AATCCGGAGCTGCTACTGCCAGCCTAGAGAACCCACGGGGAGATGATTCCTCATGAAGGGCCTGGATCCCCTACAGAAATCCAATGTGACTCTCTGTTTATCAGACTAAAACCAGAGCCAGCCAGACAGTGAAACAGCCACCGTGGAGGGGGGACGGCGAAAAATGAAATCTAACCAAGAGCGGAGCAATGAATGCCTGCCTCCCAAGAAACGTGAGATCCCCGCCACCAGTCGGCCCTCCGAGGAGAAGGCCACTGCTCTGCCCAGCGACAACCACTGCGTGGAGGGTGTGGCATGGCTCCCCAGCACCCCTGGCAGCCGCGGCCACGGGGGTGGGCGGCACGGGCCAGCAGGGACTTCCGGGGAACATGGTTTACAAGGAATGGGTTTACATAAAGCACTGTCCGCAGGGCTGGATTACTCCCCACCCAGTGCCCCCAGGTCGGTCCCCACAGCCAACACGCTGCCCACCGTGTACCCTCCTCCTCAGTCAGGGACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016998_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.659
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125473=ATXN-1_C=WD(100=5.1),PF085177=AXH=PU(56.5=10.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGAAGTCTCAGGGAGGC
R:
CTTGGGAGGCAGGCATTCATT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]