RnoEX0013657 @ rn6
Exon Skipping
Gene
ENSRNOG00000016998 | Atxn1
Description
ataxin 1 [Source:RGD Symbol;Acc:3624]
Coordinates
chr17:19378432-19520591:+
Coord C1 exon
chr17:19378432-19378495
Coord A exon
chr17:19417440-19417560
Coord C2 exon
chr17:19518590-19520591
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTGTTCTCCTGCCAGGTA
3' ss Score
9.21
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTTTCCAAAGAAAATAGACCAAAACTTTCTTCTTGACAAGAAACAAACCTGCTGTCGTCAGAGG
Seq A exon
GTATTTCTAACCTCTCTGTGAAAGAAAGACAACACCAGAGCCTGGGCGGCCCAGTTGCTGAGGGAAGTTTCCATGGTGAAGTCTCAGGGAGGCTTCCTGGGAGCAGAACATAGTGAATGCT
Seq C2 exon
AATCCGGAGCTGCTACTGCCAGCCTAGAGAACCCACGGGGAGATGATTCCTCATGAAGGGCCTGGATCCCCTACAGAAATCCAATGTGACTCTCTGTTTATCAGACTAAAACCAGAGCCAGCCAGACAGTGAAACAGCCACCGTGGAGGGGGGACGGCGAAAAATGAAATCTAACCAAGAGCGGAGCAATGAATGCCTGCCTCCCAAGAAACGTGAGATCCCCGCCACCAGTCGGCCCTCCGAGGAGAAGGCCACTGCTCTGCCCAGCGACAACCACTGCGTGGAGGGTGTGGCATGGCTCCCCAGCACCCCTGGCAGCCGCGGCCACGGGGGTGGGCGGCACGGGCCAGCAGGGACTTCCGGGGAACATGGTTTACAAGGAATGGGTTTACATAAAGCACTGTCCGCAGGGCTGGATTACTCCCCACCCAGTGCCCCCAGGTCGGTCCCCACAGCCAACACGCTGCCCACCGTGTACCCTCCTCCTCAGTCAGGGACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016998_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.659
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125473=ATXN-1_C=WD(100=5.1),PF085177=AXH=PU(56.5=10.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTGCTGTCGTCAGAGG
R:
CGGGGATCTCACGTTTCTTGG
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]