MmuEX0007059 @ mm9
Exon Skipping
Gene
ENSMUSG00000046876 | Atxn1
Description
ataxin 1 [Source:MGI Symbol;Acc:MGI:104783]
Coordinates
chr13:45661942-45830547:-
Coord C1 exon
chr13:45830484-45830547
Coord A exon
chr13:45793190-45793314
Coord C2 exon
chr13:45661942-45663949
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTGTTCTCATGCCAGGTA
3' ss Score
7.37
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTTTCCAAAGAAAATAGACCAAAACTTTCTTCTTGAGAAGAAACAAACCTGCTGTTGGCAGAGG
Seq A exon
GTATTTCTAACCTCTCTGCGAAAGAAAGAAAGACACCACCAGAACCTGGGCATCCCAGCTGCTGAGGGAAGTTTCCATGGTGAAGTCTCAGGGAGGCTTCCTGGGAGCAGAGCATAGTGAATGCT
Seq C2 exon
AATCCGGAGCTGCCACTGCCAGCCTAAAGAACCCACGGGGAGATGATTCCCCATGAAGGGCCTGGATCCCCTACAGAAATCCAATGTGACTCTCTGTTTATCAGACTAAAACCAGAGCCGGCCAGCCAGTGAAACAGCCACCGTGGAGGGGGGACGGCGAAAAATGAAATCCAACCAAGAGCGGAGCAACGAATGCCTGCCTCCCAAGAAACGTGAGATCCCCGCCACCAGCCGGCCCTCGGAGGAGAAGGCCACTGCTCTGCCCAGCGACAACCACTGCGTGGAGGGTGTGGCCTGGCTCCCCAGCACCCCTGGCATCCGCGGCCATGGGGGTGGGCGGCACGGGTCAGCAGGGACTTCCGGGGAGCATGGTTTACAAGGAATGGGTTTACATAAAGCACTGTCCGCAGGGCTGGATTACTCCCCACCCAGTGCCCCCAGGTCAGTCCCCACAGCCAACACGCTGCCCACCGTGTACCCTCCTCCTCAGTCAGGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046876-'7-12,'7-10,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.657
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125473=ATXN-1_C=WD(100=5.0),PF085177=AXH=PU(56.5=10.6),PF069718=Put_DNA-bind_N=WD(100=5.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACAAACCTGCTGTTGGC
R:
CGGGGATCTCACGTTTCTTGG
Band lengths:
250-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: