RnoEX0019610 @ rn6
Exon Skipping
Gene
ENSRNOG00000004725 | Cela1
Description
chymotrypsin-like elastase family, member 1 [Source:RGD Symbol;Acc:2547]
Coordinates
chr7:142306234-142313873:-
Coord C1 exon
chr7:142313737-142313873
Coord A exon
chr7:142311983-142312128
Coord C2 exon
chr7:142306234-142306383
Length
146 bp
Sequences
Splice sites
3' ss Seq
CGGGGTGATATCCCATTCAGCCA
3' ss Score
3.28
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTATGACATCGCCCTATTGCGCTTGGCCCAGAGTGTCACACTCAATAACTACGTCCAGCTGGCTGTTTTGCCCCAGGAGGGAACCATCCTGGCTAACAACAATCCCTGCTATATCACAGGCTGGGGGAGAACCAGAA
Seq A exon
CCAATGGGCAGCTGTCTCAGACCCTGCAGCAGGCGTACCTGCCCAGCGTGGACTACAGCATCTGCTCCAGCTCCTCTTACTGGGGCTCCACGGTGAAGACGACCATGGTGTGTGCTGGTGGAGACGGAGTCCGCTCTGGGTGCCAG
Seq C2 exon
GGTGATTCTGGGGGACCCCTCCATTGCTTGGTGAACGGCCAGTATTCTGTCCACGGAGTGACCAGCTTTGTGTCCAGTATGGGCTGTAATGTCTCCAGGAAGCCCACAGTCTTCACCCGAGTCTCTGCTTACATTTCCTGGATGAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004725-'7-14,'7-12,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(20.2=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCCCAGAGTGTCACAC
R:
AAGCAGAGACTCGGGTGAAGA
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]