RnoEX0021764 @ rn6
Exon Skipping
Gene
ENSRNOG00000000728 | Clic2
Description
chloride intracellular channel 2 [Source:RGD Symbol;Acc:1306580]
Coordinates
chr20:304751-308867:+
Coord C1 exon
chr20:304751-304860
Coord A exon
chr20:304985-305110
Coord C2 exon
chr20:308761-308867
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCAATGATCATAGAAA
3' ss Score
5.49
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GCTGGAAGTGACGGAGAAAGTATTGGAAACTGTCCTTTCTGCCAACGCCTTTTTATGATACTCTGGCTTAAGGGAGTTAAATTTAATGTGACTACTATTGATACAGCCAG
Seq A exon
AAAACCTGAAGAACTGAAGGACTTAGCCCCAGGTACCAACCCACCATTCTTGATATATAACAAAGAGTTGAAAACAGACTTCATTAAAATTGAGGAGTTTCTAGAGAAGACACTCGCTCCTCCAAG
Seq C2 exon
GTATCCTCATCTGAGTCCCAAGTACAAGGAATCTTTCGATGTGGGCTGTAATCTCTTTGCCAAATTTTCTGCGTACATTAAGAATACACAAAAGGAAGCAAATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000728-'2-7,'2-5,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(39.5=81.1)
A:
PF134171=GST_N_3=FE(55.3=100),PF134101=GST_C_2=PU(15.4=51.2)
C2:
PF134171=GST_N_3=PD(3.9=8.1),PF134101=GST_C_2=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGTGACGGAGAAAGT
R:
TGCTTCCTTTTGTGTATTCTTAATGT
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]