BtaEX0009229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010948 | CLIC2
Description
Bos taurus chloride intracellular channel 2 (CLIC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081727]
Coordinates
chrX:38511788-38520189:+
Coord C1 exon
chrX:38511788-38511897
Coord A exon
chrX:38512023-38512148
Coord C2 exon
chrX:38520083-38520189
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTCAATAATCATAGAAA
3' ss Score
4.03
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTGGAAGTGATGGGGAGAGTATTGGAAATTGTCCCTTTAGTCAACGCCTTTTTATGATCCTCTGGCTTAAAGGAGTTAAATTCAATGTGACTACTGTTGACATGACCAG
Seq A exon
AAAGCCCAAAGAGCTGAAGGACTTAGCCCCAGGCACCAATCCGCCCTTCCTGGTATATAACAAGGAGTTGAAAACAGACTTCATTAAAATTGAGGAGTTTCTAGAGCAGACACTGGCTCCTCCAAG
Seq C2 exon
GTATCCTCACTTGAGTCCCAGGAACAAGGAGTCCTTTGATGTGGGCTGTAATCTCTTTGCCAAGTTTTCTGCATACATTAAGAATACACAAAAGGAGGCCAATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010948_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.027
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(16.0=53.5)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGTGATGGGGAGAGT
R:
TGGCCTCCTTTTGTGTATTCT
Band lengths:
211-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development