HsaEX0015649 @ hg19
Exon Skipping
Gene
ENSG00000155962 | CLIC2
Description
chloride intracellular channel 2 [Source:HGNC Symbol;Acc:2063]
Coordinates
chrX:154509251-154528458:-
Coord C1 exon
chrX:154528349-154528458
Coord A exon
chrX:154528098-154528223
Coord C2 exon
chrX:154509251-154509357
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTTAATAATCATAGAAA
3' ss Score
3.53
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTGGAAGTGATGGAGAGAGTATTGGAAACTGTCCCTTTTGCCAACGCCTTTTCATGATCCTCTGGCTTAAAGGAGTTAAATTTAATGTGACAACTGTTGACATGACCAG
Seq A exon
AAAGCCTGAAGAACTAAAGGACTTAGCCCCAGGTACCAATCCTCCGTTCCTGGTGTATAACAAGGAGTTGAAAACAGACTTCATTAAAATTGAGGAGTTTTTAGAACAAACCCTGGCTCCTCCAAG
Seq C2 exon
GTACCCTCACCTGAGTCCCAAGTACAAGGAGTCTTTTGATGTGGGCTGTAACCTCTTTGCCAAGTTTTCTGCATACATTAAGAATACACAAAAGGAGGCAAATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155962_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF134091=GST_N_2=PU(29.3=73.0)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(16.0=53.5)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGTGATGGAGAGAGT
R:
ATTTGCCTCCTTTTGTGTATTCTT
Band lengths:
213-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)