DreEX0022089 @ danRer10
Exon Skipping
Gene
ENSDARG00000010625 | clic2
Description
chloride intracellular channel 2 [Source:ZFIN;Acc:ZDB-GENE-040718-299]
Coordinates
chr14:33546565-33549258:+
Coord C1 exon
chr14:33546565-33546674
Coord A exon
chr14:33547073-33547198
Coord C2 exon
chr14:33549158-33549258
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCCACCCTGTGTTGTTTAGGAA
3' ss Score
7.36
5' ss Seq
ACGGTATTG
5' ss Score
4.64
Exon sequences
Seq C1 exon
GCGGGTCATGATGGAGAAAATGTGGGGAATTGTCCCTTCTGCCAGAGACTCTTCATGGTTCTTTGGCTGAAAGGAGTCAAATTCACAGTAACCACTGTGGATATGAGGAA
Seq A exon
GAAGCCCGATGAGCTGAAGGATTTAGCTCCAGGTACCAACCCTCCTTTCCTACTGTACAATGGCACACTAAAGACTGACTTCATTAAGATCGAAGAGTTCCTGGAGACTACTCTCGCCCCTCCACG
Seq C2 exon
CTATCCTCATCTCAGCCCTCGCTACAAAGAGTCCTTTGATGTTGGTGCTGACATTTTTGCCAAGTTTTCTGCTTTCATCAAGAACAGTCCAAACAATGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010625-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.116 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(14.2=44.2)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGTCATGATGGAGAAAATG
R:
AGCATTGTTTGGACTGTTCTTGA
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]