RnoEX0022974 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82752455-82752945:+
Coord C1 exon
chr10:82752455-82752508
Coord A exon
chr10:82752686-82752753
Coord C2 exon
chr10:82752892-82752945
Length
68 bp
Sequences
Splice sites
3' ss Seq
GCCACTCCCTCTCTGTCCAGGGC
3' ss Score
10.04
5' ss Seq
TGAGCCTGG
5' ss Score
-21.14
Exon sequences
Seq C1 exon
GGTGAACCTGGTGCCCCTGGCAACAAAGGAGACACTGGTGCCAAAGGAGAACCC
Seq A exon
GGCCCTGCTGGAGTTCAAGGTCCCCCTGGCCCTGCTGGAGAAGAAGGAAAACGAGGAGCCCGTGGTGA
Seq C2 exon
GGTGGACCTGGTAGCCGTGGTTTCCCTGGTGCTGATGGTGTTGCTGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'35-24,'35-23,36-24
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(18.3=30.6)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACCTGGTGCCCCT
R:
GGGCCAGCAACACCATCAG
Band lengths:
104-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]