RnoEX0022976 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82752892-82753575:+
Coord C1 exon
chr10:82752892-82752945
Coord A exon
chr10:82753288-82753386
Coord C2 exon
chr10:82753522-82753575
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTGACTTCTTTCCACTTAGGGT
3' ss Score
9.97
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTGGACCTGGTAGCCGTGGTTTCCCTGGTGCTGATGGTGTTGCTGGCCCCAAG
Seq A exon
GGTCCTGCTGGTGAACGTGGTTCTCCTGGCCCTGCTGGTCCCAAAGGTTCTCCTGGTGAAGCTGGTCGCCCTGGTGAAGCTGGTCTCCCTGGTGCCAAG
Seq C2 exon
GGTCTCACTGGCAGTCCTGGCAGCCCTGGTCCTGATGGCAAAACCGGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'39-27,'39-25,42-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PD(48.3=87.9),PF0139113=Collagen=PU(33.3=87.9)
C2:
PF0139113=Collagen=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGTAGCCGTGGTTTC
R:
GGTTTTGCCATCAGGACCAGG
Band lengths:
95-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]