RnoEX0022982 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82754656-82755298:+
Coord C1 exon
chr10:82754656-82754709
Coord A exon
chr10:82754818-82754854
Coord C2 exon
chr10:82755254-82755298
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTCCACCTCCCACTTTACAGGGT
3' ss Score
7.98
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
GGTCCTGCTGGTGAGAGAGGTGAACAAGGTCCCGCTGGCTCCCCTGGATTCCAG
Seq A exon
GGTCTTCCTGGTCCCGCTGGTCCTCCTGGTGAAGCAG
Seq C2 exon
GGTGTTCCTGGAGACCTTGGTGCCCCTGGACCCTCTGGCGCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'53-37,'53-36,54-37
Average complexity
S*
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGTGAGAGAGGTGAA
R:
TCTTGCGCCAGAGGGTCC
Band lengths:
96-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]