RnoEX0023097 @ rn6
Exon Skipping
Gene
ENSRNOG00000050706 | Col25a1
Description
collagen type XXV alpha 1 chain [Source:RGD Symbol;Acc:1590105]
Coordinates
chr2:235618052-235634478:+
Coord C1 exon
chr2:235618052-235618096
Coord A exon
chr2:235632362-235632415
Coord C2 exon
chr2:235634452-235634478
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTTTCTGTTTGGAGGGT
3' ss Score
-2.74
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTTCCATTGGAGCACCTGGGACCCCAGGCATGGATGGGCAAAAG
Seq A exon
GGTGAGCCTGGATTACCTGGAGCGGCCGGTCAGAGTGGACTACCAGGACCCAAG
Seq C2 exon
GGGGAACCTGGAAACGAAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050706-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.2=13.3),PF0139113=Collagen=FE(21.5=100)
A:
PF0139113=Collagen=FE(26.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCATTGGAGCACCTGG
R:
TCTCCTTCGTTTCCAGGTTCC
Band lengths:
68-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]