RnoEX0023489 @ rn6
Exon Skipping
Gene
ENSRNOG00000031782 | Col6a4
Description
collagen, type VI, alpha 4 [Source:RGD Symbol;Acc:1564060]
Coordinates
chr8:114692942-114696204:-
Coord C1 exon
chr8:114696168-114696204
Coord A exon
chr8:114693521-114693532
Coord C2 exon
chr8:114692942-114693435
Length
12 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCTTTTCCCTTCCAGCTT
3' ss Score
9.28
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
CCCTGTGAAATTGTTGATTTTGTGCGAGGAAACTGCC
Seq A exon
CTTGTTCGATAG
Seq C2 exon
GTATTTCCAGATGCCCAGCATTCCCGACGGAAGTGGTCTTTGCCTTGGACATGTCCAACGACGTCTCCCAGTCAGACTTTGAGAGGATGAGAAACATTTTATTATCTCTGTTGATGAAGCTGGAAATGAGTGAGAGCAACTGTCCCACTGGTGCTCGAGTGGCCATTGTTTCCTACAACATGAGGACAGATTATCTAGTGCGCTTGTCAGACCATCGGGGAAAAGCTACCCTTCTACAGGCTGTCAGGAAAATCCCCCTGGAAAGGTCATCTGGGTTCCGAAACCTTGGGGCCACCATGAAGTTTGTGGCTAGACATGTATTCAAACGTGTACGCTCAGGGTTTTTGGTGAGGAAAGTAGCCGTGTTCTTCCAGGTGGGTGGAAATTATGACGCAACCTCTGTCAACACAGCCATGCTGGAGCTCCATGCAGCGAACATTGTCACAGCAGTAGTGACCTTCACAGAGGACCACAACCTCCCAGATGCCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031782-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009223=VWA=PU(86.5=91.1)
Main Inclusion Isoform:
ENSRNOT00000047563fB3418
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGTGCGAGGAAACTGCC
R:
AAGTCTGACTGGGAGACGTCG
Band lengths:
100-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]